View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9688_low_26 (Length: 315)
Name: NF9688_low_26
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 39815585 - 39815287
Alignment:
| Q |
18 |
acatttaacattctctcgataaactctcgcaagtgaaggacaatagttcattcctcaaggtaatcacgttgagaacaaataaaatcactattgagg---- |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39815585 |
acatttaacattctctagataaactctcgcaagtgaaggacaatagttcattcctcaaggtaatcacgttgagaacaaataaaatcactattgaggactt |
39815486 |
T |
|
| Q |
114 |
------------ttgctcaaaaaagttagttcattcctctagttcttgacgatttagttgaatactccattaacttttaagttcgacaacaaattctagt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39815485 |
aataaaatgagattgctcaaaaaagttagttcattcctctagttcttaacgttttagttgaatactccattaacttttaagttcgacaacaaattctagt |
39815386 |
T |
|
| Q |
202 |
tataaaaaatcctttgtcacgcttatcatttctcatttatattttccttcatcaagtttttatcatttgttctcttgcccgactggattcaccattgat |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39815385 |
tataaaaaatcctttgtcatgcttatcatttctcatttatattttccttcatcaagtttttatcatttgttctcttgcccgactggattcaccattgat |
39815287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 39812918 - 39812774
Alignment:
| Q |
156 |
tagttgaatactccattaacttttaagttcgacaacaaattctagttataaaaaatcctttgtcacgcttatcatttctcatttatattttccttcatca |
255 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39812918 |
tagttgaatactcgagtaacttttaagttcgacaacaaattctagtgctcaaaaatcctttctcgcgcttatcatttctcatttatcttttccttcatca |
39812819 |
T |
|
| Q |
256 |
agtttttatcatttgttctcttgcccgactggattcaccattgat |
300 |
Q |
| |
|
||||||||||||||||||| |||||| || |||||||||||||| |
|
|
| T |
39812818 |
agtttttatcatttgttcttttgcccagctagattcaccattgat |
39812774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 39813018 - 39812925
Alignment:
| Q |
18 |
acatttaacattctctcgataaactctcgcaagtgaaggacaatagttcattcctcaaggtaatcacgttgagaacaaataaaatcactattgag |
112 |
Q |
| |
|
|||||||||||||||| || |||||||| ||| ||||||||||| ||||| |||||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
39813018 |
acatttaacattctctagagaaactctcacaaatgaaggacaatt-ttcatacctcaatgcaatcacgttgagaacaaataaaatcattattgag |
39812925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University