View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_27 (Length: 314)
Name: NF9688_low_27
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 91 - 299
Target Start/End: Original strand, 28905246 - 28905452
Alignment:
| Q |
91 |
agaaatatataagcatgaaaatgagcatcaaaacccaaagttggtgaaaatcttgagctgagaccacatacagagtaaaatctagtcaaaattctgtaac |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
28905246 |
agaaatatataagcatgaaaatgagcatcaaaacccaaagttggtgaaaatcttgagc--agaccacatacagagtaaaatctagtcaaaattctgaaac |
28905343 |
T |
|
| Q |
191 |
tgattttttattttagaatgaaatctnnnnnnnnnnnnnnnntcagtttcatcattcatgatagaaatgtataatcatgcaatgaatgaatgaagtatga |
290 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28905344 |
tgattttttattttagaatgaaatctaaaataaaaaacaaaatcagtttcatcattcatgatagaaatgtataatcatgcaatgaatgaatgaagtatga |
28905443 |
T |
|
| Q |
291 |
gaagaactt |
299 |
Q |
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||||||||| |
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| T |
28905444 |
gaagaactt |
28905452 |
T |
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