View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9688_low_29 (Length: 289)
Name: NF9688_low_29
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 41227905 - 41227633
Alignment:
| Q |
1 |
tgacagatttgggagctaaactccaatggaaccctggtaaatagttactctggtctttgtgcaacagtgaagtatatccaaggtgaattttactagtaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41227905 |
tgacagatttgggagctaaactccaatggaaccctggtaaatagttactctggtctttgtgcaacagtgaagtatatccaaggtgaattttactagtaca |
41227806 |
T |
|
| Q |
101 |
tatatatgtccaacatataattaataagtacgcgagtttggaccaaatacatttacctttttgtttatatttaaaaccagaggaaatataatttgtcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41227805 |
tatatatgtccaacatataattaataagtacgcgagtttggaccaaatacatttacctttttgtttatatttaagaccagaggaaatataatttgtcttc |
41227706 |
T |
|
| Q |
201 |
cctgtgcagctaatgttgaatcgggtggcattcgctcttggattgcaacgggaagaaaaggagaagtatatat |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41227705 |
cctgtgcagctaatgttgaatcgggtggcattcgctcttggattgcaacaggaagaaaaggagaagtatatat |
41227633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 37384973 - 37385061
Alignment:
| Q |
3 |
acagatttgggagctaaactccaatggaaccctggtaaatagttactctggtctttgtgcaacagtgaagtatatccaaggtgaatttt |
91 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
37384973 |
acagatttgggagctaaactccaatgggaccctggtaaacagttactcaggtctttgtgcaacagtaaagtatatagaaggtgaatttt |
37385061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 37408588 - 37408534
Alignment:
| Q |
213 |
atgttgaatcgggtggcattcgctcttggattgcaacgggaagaaaaggagaagt |
267 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37408588 |
atgttgattcggatggcattcgctcttggattgcaacgggaagaaaaggagaagt |
37408534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 37377561 - 37377650
Alignment:
| Q |
3 |
acagatttgggagctaaactccaatggaaccctggtaaatagttactctggtctttgtgcaacagtgaagtatatccaaggtgaatttta |
92 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||||||||||||| || || |||| |||||| |||||| | ||||||||||||| |
|
|
| T |
37377561 |
acagatttgggagctacactccaatgggaccatggtaaatagttactcaggactgtgtgtaacagtaaagtatttagaaggtgaatttta |
37377650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 37377742 - 37377806
Alignment:
| Q |
203 |
tgtgcagctaatgttgaatcgggtggcattcgctcttggattgcaacgggaagaaaaggagaagt |
267 |
Q |
| |
|
|||||||| ||||| | ||||||||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
37377742 |
tgtgcagcaaatgtagtatcgggtgggattcgctcttggattgcaacggggagaaacggagaagt |
37377806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 37385154 - 37385218
Alignment:
| Q |
203 |
tgtgcagctaatgttgaatcgggtggcattcgctcttggattgcaacgggaagaaaaggagaagt |
267 |
Q |
| |
|
|||||||| ||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
37385154 |
tgtgcagcaaatgttgtttcgggtgggattcgttcttggattgcaacggggagaaacggagaagt |
37385218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 37362019 - 37362052
Alignment:
| Q |
234 |
gctcttggattgcaacgggaagaaaaggagaagt |
267 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
37362019 |
gctcttggattgcgacgggaagaaaaggagaagt |
37362052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 37366042 - 37366009
Alignment:
| Q |
234 |
gctcttggattgcaacgggaagaaaaggagaagt |
267 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
37366042 |
gctcttggattgcgacgggaagaaaaggagaagt |
37366009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 5905175 - 5905207
Alignment:
| Q |
158 |
tttttgtttatatttaaaaccagaggaaatata |
190 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
5905175 |
tttttgtttatatttaaaactagaggaaatata |
5905207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University