View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_3 (Length: 535)
Name: NF9688_low_3
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_3 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 6186098 - 6186617
Alignment:
| Q |
1 |
aacagcccaagatagtattgctttttctgttggacttcctgaaaactcaaattcagaatccgaacctgttttcgatttgtgaacatcaccagttgtattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6186098 |
aacagcccaagatagtattgctttttctgttggacttcctgaaaactcaaattcagaatccgaacctgttttcgatttgtgagcatcaccagttgtattg |
6186197 |
T |
|
| Q |
101 |
agagcaactccttctttgatcaattgaagaacagatggatcaacattggaatatgcacctccttccaatggttcaaaaccgagccaaaactttgtcacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6186198 |
agagcaactccttctttgatcaattgaagaacagatggatcaacattggaatatgcaccttcttccaatggttcaaaaccgagccaaaactttgtcacct |
6186297 |
T |
|
| Q |
201 |
tcatctgattcaaagtaagtgtacctattacaaatcacagaatcaaaagtaagattcttgttacaaaataaataatcacttttgaaaacagcttttaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6186298 |
tcatctgattcaaagtaagtgtacctattacaaatcacagaatcaaaagtaagattcttgttacaaaataaataatcacttttgaaaacagcttttaaag |
6186397 |
T |
|
| Q |
301 |
aatcaagtatttttcaatagtacctgttttgtcggtacaaatagtagtagcagatcccatagtctcacatgcagagagttttctcaccattgcttgatca |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6186398 |
aatcaagtttttttcaatagtacctgttttgtcggtgcaaatagtagtagcagatcccatagtctcacatgcagagagttttctcaccattgcttcatca |
6186497 |
T |
|
| Q |
401 |
gccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaataa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6186498 |
gccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaataa |
6186597 |
T |
|
| Q |
501 |
ttccaataatcgcattcatc |
520 |
Q |
| |
|
|||||||||| ||||||||| |
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|
| T |
6186598 |
ttccaataattgcattcatc |
6186617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 5e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4237005 - 4237226
Alignment:
| Q |
1 |
aacagcccaagatagtattgctttttctgttggacttcctgaaaactcaaattcagaatccgaacctgttttcgatttgtgaacatcaccagttgtattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||||| |
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|
| T |
4237005 |
aacagcccaagatagtattgctttttctgttggactaccagaaaactcaaattcagaatcagaacctgatttcaatttgtgaacaccaccagttgtattg |
4237104 |
T |
|
| Q |
101 |
agagcaactccttctttgatcaattgaagaacagatggatcaacattggaatatgcacctccttccaatggttcaaaaccgagccaaaactttgtcacct |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||| |||||| ||||| ||||||||||||||||||| |
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|
| T |
4237105 |
agagaaactccttctttgatcaattgaagaacaaatggatcaacatttgaatatgtaccaacttccattggttctaaaccaagccaaaactttgtcacct |
4237204 |
T |
|
| Q |
201 |
tcatctgattcaaagtaagtgt |
222 |
Q |
| |
|
|||| ||||||| ||| ||||| |
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|
| T |
4237205 |
tcatttgattcatagtgagtgt |
4237226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 316 - 520
Target Start/End: Original strand, 4243357 - 4243561
Alignment:
| Q |
316 |
aatagtacctgttttgtcggtacaaatagtagtagcagatcccatagtctcacatgcagagagttttctcaccattgcttgatcagccatcattttcttc |
415 |
Q |
| |
|
|||||||||||| || || || |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4243357 |
aatagtacctgtcttatcagtgcaaatagtagtagctgatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttc |
4243456 |
T |
|
| Q |
416 |
attgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaataattccaataatcgcat |
515 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| |||||||| || || |||||||| |||||||||||||||||||||||||||||||||| |||| |
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|
| T |
4243457 |
attgaataagcgagtgtcaatgtcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcat |
4243556 |
T |
|
| Q |
516 |
tcatc |
520 |
Q |
| |
|
||||| |
|
|
| T |
4243557 |
tcatc |
4243561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 483
Target Start/End: Original strand, 38358065 - 38358195
Alignment:
| Q |
353 |
gatcccatagtctcacatgcagagagttttctcaccattgcttgatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggca |
452 |
Q |
| |
|
||||||||||| ||||| || || ||||| |||||||| || ||||| ||||||||| | ||||| || || ||||| || | ||||||||| ||||||| |
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|
| T |
38358065 |
gatcccatagtttcacaagctgaaagtttcctcaccatagcatgatctgccatcattcttttcatggagtaagcaagagttagtgtcacagccaatggca |
38358164 |
T |
|
| Q |
453 |
aaccctcaggaattgcaacaacaacaatagt |
483 |
Q |
| |
|
|||||||||| || ||||| || |||||||| |
|
|
| T |
38358165 |
aaccctcagggatggcaacgaccacaatagt |
38358195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 490
Target Start/End: Complemental strand, 47487560 - 47487502
Alignment:
| Q |
432 |
tcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagca |
490 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||||| |
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|
| T |
47487560 |
tcaatgtcacagctaaaggtaaaccttcaggaacagcaacaacaacaattgtaacagca |
47487502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 39951669 - 39951730
Alignment:
| Q |
403 |
catcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaa |
464 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||| ||||||||||| |||||||| |||| |
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|
| T |
39951669 |
catcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaa |
39951730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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