View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_33 (Length: 270)
Name: NF9688_low_33
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 12775237 - 12775490
Alignment:
| Q |
1 |
tatggtggaaattgcagttttacagaaccgtgaaactttgtagtgcatccaaatttagattataaccgcaaaaaatttcttaagactatggagtgattgt |
100 |
Q |
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| T |
12775237 |
tatggtcgaaattgcagtttcacagaaccgtgaaactttgtagtgcatccaaatttagattataaccgcaaaaaaattcttaagactatggagtgattgt |
12775336 |
T |
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| Q |
101 |
ttgatttggtttagttcatttggattagggcttgttagaatattggtgcccatagggaggaaaaggcctaagatgcttttctttttctattgagttggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12775337 |
ttgatttggtttagttcatttggattagggcttgttagaattttggtgcccatagggaggaaaaggcctaagatgcttttctttttctattgagttggtt |
12775436 |
T |
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| Q |
201 |
ttcttccatattttgattgagattctgtgtcttctctttctctcgtaagctttc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12775437 |
ttcttccatattttgattgagattctgtgtcttctctttctctcgtaagctttc |
12775490 |
T |
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