View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_36 (Length: 252)
Name: NF9688_low_36
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 13718274 - 13718513
Alignment:
| Q |
2 |
aggaaggagagttggattgcggtgatattctaccaccactacaattcaaccctcctttccctttatcctttcccttttcgctctactgacaccaaccaaa |
101 |
Q |
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| T |
13718274 |
aggaaggagagttggattgcggtgatattccaccaccactacaattcaaccgtcctttccctttatcctttcccttttcgctctactgacaccaaccaaa |
13718373 |
T |
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| Q |
102 |
tagaaagatgtaaatggccattaatgaggacaatggatgatgactttacgctggacaatgaagacgcgtagtaacctcaaatccaaaattgatatttcat |
201 |
Q |
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| T |
13718374 |
tagaaagatgtaaatgcccattaatgaggacaatggatgatgactttacgctggacaatgaagacgcgtagtaacctcaaatccgaaattgatatttcat |
13718473 |
T |
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| Q |
202 |
tctcatacatttctggttttatagatagtgttctcctttg |
241 |
Q |
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| T |
13718474 |
tctcatacatttctggttttatagatagtgttctcctttg |
13718513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 27322275 - 27322397
Alignment:
| Q |
112 |
taaatggccattaatgaggacaatggatgatgactttacgctggacaatgaagacgcgtagtaacctcaaatccaaaattgatatttcattctcatacat |
211 |
Q |
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| T |
27322275 |
taaatgcccattaacgaggataatggatgaggactttacgctgaccaatgaaaacacgta----cctcaaatccggaattgatgttccagtctcatacgt |
27322370 |
T |
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| Q |
212 |
ttctggttttatagatagtgttctcct |
238 |
Q |
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| T |
27322371 |
ttctgcttttatagatagtgttctcct |
27322397 |
T |
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