View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_4 (Length: 472)
Name: NF9688_low_4
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 220 - 454
Target Start/End: Original strand, 13116550 - 13116787
Alignment:
| Q |
220 |
acttagcttactcttcaagttaacagggtcctacatattattccttaagcaagtcatatacatat--tctatatatagatgggtgcaacatctcctac-a |
316 |
Q |
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| T |
13116550 |
acttagcttactcttcaagttaacagggtcctacatattattccttaagcaagtcatatacatatattctatatatagatgggtgcaacatctcctacca |
13116649 |
T |
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| Q |
317 |
aggcatctaaaactttagctcttccaagctagcttgctaacaatggcatcattgatgcaattgctgcgcatccttgatgaggatcatgtggaagaaccac |
416 |
Q |
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| T |
13116650 |
aggcatctaaaacttgagcccttccaagctaactagttaacaatggcatcattgatgcaattgctgaacctccttgatgaggatcatgtggaagaaccac |
13116749 |
T |
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| Q |
417 |
aacctcgacaaccacgacgacgcaaccgcaatggttcc |
454 |
Q |
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| T |
13116750 |
aacctcgacaaccacgacgacgcaaccgcaatggttcc |
13116787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 13116277 - 13116478
Alignment:
| Q |
6 |
gagagagatgaagagagtaaaatgatagattatttgacgtgtaattataattgatgtgttaagacaagagagatagagaaaaaatgaaggattaaagaga |
105 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13116277 |
gagagaaataaagagagtaaaatgatagattatttgacgtgtaattataattgatgtgttaagataagagagatagagaaaaaatgaaggattaaagaga |
13116376 |
T |
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| Q |
106 |
tgtaataaaggtaaacaaatataattgctctataagacatttattattttgtgaataatgaatttaatcaattaaacctctaactgatgttatgttatgt |
205 |
Q |
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| T |
13116377 |
tgtaataaagataaacaaatataattgctctataagacatttattattttgtgaataatgaatttaatcaattaaacctctaactgatgttatgttatgt |
13116476 |
T |
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| Q |
206 |
ca |
207 |
Q |
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| T |
13116477 |
ca |
13116478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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