View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_40 (Length: 250)
Name: NF9688_low_40
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 9406805 - 9407025
Alignment:
| Q |
19 |
catatagcttcacaatctaatggttagaattgtttacattcacttgctcacggtaggagacctattaaggtcttccacactggaccgagccatgttttat |
118 |
Q |
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| T |
9406805 |
catatagcttcacaatctaatggttagaattttttacattcacttgctcacggtaggagacctattaaggtctcccacactagaccgagccatgttttat |
9406904 |
T |
|
| Q |
119 |
caatttagatgtttacttaacttgtttttcaaaactttcaatttctataatagtaact--nnnnnnntctttgatttttagtccttaaaaatttttccgt |
216 |
Q |
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| T |
9406905 |
caatttagatgtttacttaacttgttttttgaaactttcaatctctataatagtaactaaaaaaaaatctttgatttttagtccctaaaaaattttccgt |
9407004 |
T |
|
| Q |
217 |
ccacagttttagtctctacct |
237 |
Q |
| |
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||||||||||||||||||||| |
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| T |
9407005 |
ccacagttttagtctctacct |
9407025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 9369134 - 9369099
Alignment:
| Q |
61 |
cttgctcacggtaggagacctattaaggtcttccac |
96 |
Q |
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| T |
9369134 |
cttgctcacggtaggagacctattaaggtctcccac |
9369099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 42859847 - 42859741
Alignment:
| Q |
3 |
agtgtatgctaaaaatcatatagcttcacaatctaatggttagaattgtttacattcacttgctcacggtaggagacctattaaggtcttccacactgga |
102 |
Q |
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| T |
42859847 |
agtgtatgctaaaaatcatatagcttcacaatctaatgcttagaattttttacattcacttgctcacggtaggagacctattaaggtctcccacactaga |
42859748 |
T |
|
| Q |
103 |
ccgagcc |
109 |
Q |
| |
|
||||||| |
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|
| T |
42859747 |
ccgagcc |
42859741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 23668266 - 23668231
Alignment:
| Q |
61 |
cttgctcacggtaggagacctattaaggtcttccac |
96 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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|
| T |
23668266 |
cttgctcacggtaggagacctattaaggtctcccac |
23668231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 28699209 - 28699102
Alignment:
| Q |
1 |
acagtgtatgctaaaaatcatatagcttcacaatctaatggttagaattgtttacattcacttgctcacggtaggagacctattaaggtcttccacactg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| ||| ||||||| |
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| T |
28699209 |
acagtgtatgctaaaaatcatatagcttcacaatctaatagttagaattttttacattcacttgctcacgataggagacctattaagatctcccacacta |
28699110 |
T |
|
| Q |
101 |
gaccgagc |
108 |
Q |
| |
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|||||||| |
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|
| T |
28699109 |
gaccgagc |
28699102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 10670802 - 10670904
Alignment:
| Q |
8 |
atgctaaaaatcatatagcttcacaatctaatggttagaattgttt-acattcacttgctcacggtaggagacctattaaggtcttccacactggaccga |
106 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||| || || |||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
10670802 |
atgctaaaaatcatatagcttcacaatctaatgattagaatttttttacttttacttgctcacggtaggagacctattaaggtctcccacactagaccga |
10670901 |
T |
|
| Q |
107 |
gcc |
109 |
Q |
| |
|
||| |
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|
| T |
10670902 |
gcc |
10670904 |
T |
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