View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_42 (Length: 247)
Name: NF9688_low_42
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 38447898 - 38447678
Alignment:
| Q |
1 |
ttctgagggagtggaggcagatcagattgcatagtcaaaagtataggtaaaattccagcgccacccctgaaattgacgaaagtaattgtaaatttaacgt |
100 |
Q |
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| T |
38447898 |
ttctgagggagtggaggcagatcagattgcatagtcaaaagtataggtgaaattccagcgccacccctgaaattgacgaaagtaattgtaaatttaacgt |
38447799 |
T |
|
| Q |
101 |
ataannnnnnnacggaaaactattattaatattggcaacactaatagatatatataaaagagaatagcaatgcataatctactcacctatcaatcaatct |
200 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
38447798 |
ataatttttttacagaaaactattattaatattggcaacactaatagat------------gtatagcaatgcataatctactcacctatcaatcaatct |
38447711 |
T |
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| Q |
201 |
tgaggtagtatgattgcttgtagaagtacttcc |
233 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38447710 |
cgaggtagtatgattgcttgtagaagtacttcc |
38447678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 38343063 - 38342982
Alignment:
| Q |
152 |
atataaaagagaatagcaatgcataatctactcacctatcaatcaatcttgaggtagtatgattgcttgtagaagtacttcc |
233 |
Q |
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| T |
38343063 |
atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagtagtatgattgcatgtagaagtacttcc |
38342982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 38447256 - 38447175
Alignment:
| Q |
152 |
atataaaagagaatagcaatgcataatctactcacctatcaatcaatcttgaggtagtatgattgcttgtagaagtacttcc |
233 |
Q |
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| T |
38447256 |
atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagtagtatgattgcatgtagaagtacttcc |
38447175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 6067706 - 6067753
Alignment:
| Q |
186 |
cctatcaatcaatcttgaggtagtatgattgcttgtagaagtacttcc |
233 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
6067706 |
cctatcaatcaatgttgaagtagtatgattgcttgtagaagtacttcc |
6067753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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