View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9688_low_43 (Length: 247)

Name: NF9688_low_43
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9688_low_43
NF9688_low_43
[»] chr1 (8 HSPs)
chr1 (13-247)||(12774824-12775058)
chr1 (13-246)||(12804517-12804750)
chr1 (20-247)||(50788824-50789051)
chr1 (38-246)||(4160289-4160497)
chr1 (28-234)||(36989242-36989448)
chr1 (13-246)||(42287004-42287237)
chr1 (38-211)||(31644099-31644272)
chr1 (53-246)||(28496112-28496305)
[»] chr8 (2 HSPs)
chr8 (38-246)||(5788729-5788937)
chr8 (28-234)||(33186637-33186843)
[»] chr2 (3 HSPs)
chr2 (115-247)||(40040778-40040910)
chr2 (29-246)||(42898201-42898418)
chr2 (50-243)||(38895866-38896059)
[»] chr4 (2 HSPs)
chr4 (95-237)||(22085521-22085663)
chr4 (29-243)||(30518157-30518371)
[»] chr7 (2 HSPs)
chr7 (86-246)||(40749350-40749510)
chr7 (122-234)||(44150818-44150930)
[»] chr3 (1 HSPs)
chr3 (68-237)||(52248370-52248539)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 12774824 - 12775058
Alignment:
Q  13 agagccaaagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12774824 agagccaaagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaaacactat 12774923  T
Q  113 tttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtacta 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12774924 tttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtacta 12775023  T
Q  213 aggagtatagatgtgactgtggcactctcttctcc 247  Q
    |||||||||||||||||||||||||||||||||||    
T  12775024 aggagtatagatgtgactgtggcactctcttctcc 12775058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 12804750 - 12804517
Alignment:
Q  13 agagccaaagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |    
T  12804750 agagccaaagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaagcacttt 12804651  T
Q  113 tttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtacta 212  Q
    | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12804650 tctagaaagcatggtgagaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtacta 12804551  T
Q  213 aggagtatagatgtgactgtggcactctcttctc 246  Q
     |||||||||||||||||||||||||||||||||    
T  12804550 gggagtatagatgtgactgtggcactctcttctc 12804517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 50789051 - 50788824
Alignment:
Q  20 aagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaa 119  Q
    ||||||||||||||| ||||||| || || ||||| ||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||| | | | |    
T  50789051 aagagaaaggtttatctgtgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgca 50788952  T
Q  120 agcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagta 219  Q
    | ||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||| || |  || ||    
T  50788951 aacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaata 50788852  T
Q  220 tagatgtgactgtggcactctcttctcc 247  Q
    ||| ||||||||||||||||||||||||    
T  50788851 taggtgtgactgtggcactctcttctcc 50788824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 38 - 246
Target Start/End: Original strand, 4160289 - 4160497
Alignment:
Q  38 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaat 137  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| |||| ||| || ||||| |||||||| || |    
T  4160289 tgtccagagccaacatgtgttcaccatgacccttcaagggcacttggtgacctaactggaatcaagaagcactttttcaggaagcacggtgagaagaagt 4160388  T
Q  138 ggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcac 237  Q
    |||||||||| || ||||||||   |||||| ||||| || ||||||||||||||||| || | |||||| ||||| |||||||  ||||||||||| ||    
T  4160389 ggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtggaac 4160488  T
Q  238 tctcttctc 246  Q
     ||||||||    
T  4160489 cctcttctc 4160497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 28 - 234
Target Start/End: Original strand, 36989242 - 36989448
Alignment:
Q  28 ggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggt 127  Q
    ||||||| | ||||| |||||  ||||||| |||||| ||||| |||| || ||||| || || ||||||||||| || |||| || |||||||||||||    
T  36989242 ggtttatgtttgtcctgaaccttcatgtgtacaccataaccctgcaagagcacttggtgatcttactggaattaaaaagcacttttgtagaaagcatggt 36989341  T
Q  128 gagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtg 227  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |  |||||||| | ||| || | |||||    
T  36989342 gagaaaaagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatgtg 36989441  T
Q  228 actgtgg 234  Q
    |||||||    
T  36989442 actgtgg 36989448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 42287004 - 42287237
Alignment:
Q  13 agagccaaagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactat 112  Q
    |||||||| ||||||||||||||||||||| || || ||||| || || || ||||||||||| ||| | || || || ||||||||||| || || |      
T  42287004 agagccaaggagaaaggtttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttc 42287103  T
Q  113 tttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtacta 212  Q
    | | | ||||| |||||||| || ||||| |||||||| || || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  42287104 tctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtacta 42287203  T
Q  213 aggagtatagatgtgactgtggcactctcttctc 246  Q
      || ||||||||||| |||||||| ||||||||    
T  42287204 gagaatatagatgtgattgtggcaccctcttctc 42287237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 31644272 - 31644099
Alignment:
Q  38 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaat 137  Q
    |||||||| ||  |||||||||| ||| ||||||||||||||||||| || || || |||||||||||||| |||  |||||| ||||||||||||||||    
T  31644272 tgtccagagccttcatgtgttcatcataacccttcaagggctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaat 31644173  T
Q  138 ggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtact 211  Q
    |||| ||||| ||||| || ||||  ||||||||||| ||||||||||||||||| ||||| || |||||||||    
T  31644172 ggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtact 31644099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 246
Target Start/End: Complemental strand, 28496305 - 28496112
Alignment:
Q  53 tgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagt 152  Q
    ||||| ||||||||||||||||| || ||||| |||||||| || || || || |||| |  ||||||||| |||||||| || ||||| |||||||| |    
T  28496305 tgtgtccaccatgacccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaat 28496206  T
Q  153 gttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcactctcttctc 246  Q
    |||| || |||||||| || ||||||||||||||||||||| | || || |||||||| |  || || | ||||||||||||||| ||||||||    
T  28496205 gttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctc 28496112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 38 - 246
Target Start/End: Complemental strand, 5788937 - 5788729
Alignment:
Q  38 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaat 137  Q
    |||||||||||||| ||||| || ||||| || ||||| ||  | || ||  | |||||||| |||||||||| ||  ||||||||||||||||| || |    
T  5788937 tgtccagaaccaacttgtgtgcatcatgatccatcaagagcattaggggatttgactggaatcaagaaacacttttccagaaagcatggtgagaagaagt 5788838  T
Q  138 ggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcac 237  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||  || ||||||||||||||||| ||    
T  5788837 ggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatgtgactgtggaac 5788738  T
Q  238 tctcttctc 246  Q
     ||||||||    
T  5788737 cctcttctc 5788729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 234
Target Start/End: Original strand, 33186637 - 33186843
Alignment:
Q  28 ggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggt 127  Q
    ||||||| | ||||| ||||| || |||||||| ||||| ||||| || ||| | || ||  | ||||| || || || |||| || |||||| ||||||    
T  33186637 ggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggt 33186736  T
Q  128 gagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtg 227  Q
    |||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||   ||||||| |||  ||||||| |||||    
T  33186737 gagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtg 33186836  T
Q  228 actgtgg 234  Q
    | |||||    
T  33186837 attgtgg 33186843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 247
Target Start/End: Original strand, 40040778 - 40040910
Alignment:
Q  115 tagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaag 214  Q
    ||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||  ||||| |||||| |||||     
T  40040778 tagaaagcacggtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattggaaggctcatagtaagatttgtggcactaaa 40040877  T
Q  215 gagtatagatgtgactgtggcactctcttctcc 247  Q
    ||||| |||||||| |||||||| || ||||||    
T  40040878 gagtacagatgtgattgtggcacactattctcc 40040910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 42898201 - 42898418
Alignment:
Q  29 gtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtg 128  Q
    |||||| |||||||||||||||| ||||| ||||||||||| ||||| ||  | || ||||| ||||| || ||||| ||||  |  |||||||| ||||    
T  42898201 gtttatgtgtgtccagaaccaacttgtgtgcaccatgacccatcaagagccttgggggacctaactggtatcaagaagcacttctgcagaaagcacggtg 42898300  T
Q  129 agaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtga 228  Q
    |||| || ||||| ||||| ||||| |||||||| ||||| |||||||| || ||||||||||| || || || ||||| || |  || || ||||||||    
T  42898301 agaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagagaatacagatgtga 42898400  T
Q  229 ctgtggcactctcttctc 246  Q
    |||||| || ||||||||    
T  42898401 ctgtggaaccctcttctc 42898418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 243
Target Start/End: Complemental strand, 38896059 - 38895866
Alignment:
Q  50 acatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaa 149  Q
    |||||||||||  || | |||||||||||| | || ||  | ||||| || ||||| |||| || ||| || || |||||||| || ||||||||||| |    
T  38896059 acatgtgttcataatcatccttcaagggctttgggagatttaactgggataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgaga 38895960  T
Q  150 agtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcactctctt 243  Q
    |||| || ||    |||||||||||||| ||||||||||| || || ||||||||||||||||  || || | |||||| ||||||||| ||||    
T  38895959 agtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatgtgattgtggcactatctt 38895866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 22085663 - 22085521
Alignment:
Q  95 ggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcatt 194  Q
    ||||| |||||||| |||  |||||| ||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||     
T  22085663 ggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcata 22085564  T
Q  195 ctaagacttgtggtactaaggagtatagatgtgactgtggcac 237  Q
      |||| |||||| ||||  ||||| | |||||| ||||||||    
T  22085563 gcaagatttgtggaactagagagtacaaatgtgattgtggcac 22085521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 243
Target Start/End: Complemental strand, 30518371 - 30518157
Alignment:
Q  29 gtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtg 128  Q
    |||||| ||||||||||   ||| ||||| |||||||| ||||||||||| ||||| ||| | ||||| || || || |||| || ||||||||||||||    
T  30518371 gtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtg 30518272  T
Q  129 agaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtga 228  Q
    | || || ||||||||||| ||||| || ||    ||||||||||| || |||||||||||||| || || || ||||||||||  || || | ||||||    
T  30518271 aaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtga 30518172  T
Q  229 ctgtggcactctctt 243  Q
    |||||| ||| ||||    
T  30518171 ctgtggaactatctt 30518157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 246
Target Start/End: Original strand, 40749350 - 40749510
Alignment:
Q  86 gacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattgga 185  Q
    |||||||| ||||| |||||||| | |  |||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||| || |||||||||||||    
T  40749350 gacctcaccggaataaagaaacattttagtagaaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattgga 40749449  T
Q  186 aagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcactctcttctc 246  Q
    |||||||  |||| |||||||||||||  || ||||  ||||| ||||| || ||||||||    
T  40749450 aagctcacactaaaacttgtggtactagagaatataagtgtgattgtggtacactcttctc 40749510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 44150930 - 44150818
Alignment:
Q  122 catggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtata 221  Q
    ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||||||| |||||||| |||||    || ||||||||||||| ||| || |    
T  44150930 catggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaataca 44150831  T
Q  222 gatgtgactgtgg 234  Q
     |||||| |||||    
T  44150830 aatgtgattgtgg 44150818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 237
Target Start/End: Complemental strand, 52248539 - 52248370
Alignment:
Q  68 ccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatg 167  Q
    |||||||| || || || |||||||| ||| | || || |||| || |||||||||||||||||| |||||||| ||||||   |||||||| ||||| |    
T  52248539 ccttcaagagcactcggtgacctcacaggagtgaaaaagcacttttgtagaaagcatggtgagaagaaatggaaatgtgaacgttgttctaaaaaatacg 52248440  T
Q  168 ctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcac 237  Q
    |||   ||| ||||| ||||| ||||   ||||  ||||| ||||  ||||||| |||||| ||||||||    
T  52248439 ctgcgaaatgtgatttgaaagttcatatgaagagctgtggaactagagagtataaatgtgattgtggcac 52248370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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