View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_44 (Length: 245)
Name: NF9688_low_44
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 49169230 - 49168998
Alignment:
| Q |
18 |
aagatcccttgcaccatcctattattgactctaagctactatgtttgacatttccaaatttta--------tgtttccattgatgtattgattactacta |
109 |
Q |
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| T |
49169230 |
aagatcccttgcaccatcctattattgactctaagctactatctttgacatttccaaattttaccagactgtgtttccattgatgtattgattactacta |
49169131 |
T |
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| Q |
110 |
ctatttcatatgtaattttgcctctaagattagtataaataaggtcattcctttcatgtaagatcat---------tgtaaaattgtgagtttctaattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
49169130 |
ctatttcatatgtaattttgcctctaagattagtataaataaggtcattcctttcatgtaagatcattaaagtttatctaaaattgtgagtttctaattt |
49169031 |
T |
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| Q |
201 |
gagaattaaagagtatattctctcttgacttct |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
49169030 |
gagaattaaagagtatattctctcttgacttct |
49168998 |
T |
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