View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_45 (Length: 243)
Name: NF9688_low_45
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 34626347 - 34626560
Alignment:
| Q |
11 |
cagagaatctgatgatgctattattatcattattattttctccttgtagctatatgcatttatagaagaaaattgaaggaacagnnnnnnnnccttcaag |
110 |
Q |
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| T |
34626347 |
cagagaatctgatgatgctattattatcattattattttctccttgtagctatatgcatttatagaagaaaattgaaggaacagaaaaaaa-ccttcaag |
34626445 |
T |
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| Q |
111 |
tagtgcatcacgaacttcttctagtgtcacatttaatgctcgcaagagaattgataaattttgtgctttctttgagtcaatgatttggatatactgaggt |
210 |
Q |
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| T |
34626446 |
tagtgcatcacgaacttcttctagtgtcacatttaatgctcgcaagagaattgataaattttgtgctttctttgagtcaatgatttggatatactgaggt |
34626545 |
T |
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| Q |
211 |
gtatcacgtaaggaa |
225 |
Q |
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| T |
34626546 |
gtatcacgtaaggaa |
34626560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 31564723 - 31564624
Alignment:
| Q |
112 |
agtgcatcacgaacttcttctagtgtcacatttaatgctcgcaagagaattgataaattttgtgctttctttgagtcaatgatttggatatactgaggtg |
211 |
Q |
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| T |
31564723 |
agtgcatcacaaacttcttccatcgtcacgttcaatgcgcgcaacagaattaataaattttgtgctttctttttgtcgacgatctggatatattgaggtg |
31564624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 15511752 - 15511673
Alignment:
| Q |
112 |
agtgcatcacgaacttcttctagtgtcacatttaatgctcgcaagagaattgataaattttgtgctttctttgagtcaat |
191 |
Q |
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||||||||| ||||||| || ||||||||| | || ||||| |||||||||||||| ||||||||||||| |||||| |
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| T |
15511752 |
agtgcatcaacaacttctgctgttgtcacattcagagcacgcaaaagaattgataaattctgtgctttctttgggtcaat |
15511673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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