View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_46 (Length: 242)
Name: NF9688_low_46
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 28699263 - 28699442
Alignment:
| Q |
1 |
ctccatccccatccttctttccacgacagatctccagaaacactcacatttgtcatctccttctcgttgtagtcatttatagatgttttttcctctttaa |
100 |
Q |
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| T |
28699263 |
ctccatccccatccttctttccacgacagatctccagaaacactcacatttgccatctccttcccgttgtagtcatttatagatgttttttcctctttaa |
28699362 |
T |
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| Q |
101 |
atttcctttaaatcattaaattgaaaatcatgattgcaaaagattcaaatagtatgctatcttcgatttcaatttacaac |
180 |
Q |
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| T |
28699363 |
atttcctttaaatcattgaattgaaaatcatgattgcaaaagattcaaatagtatgctatcttcaatttcaatttacaac |
28699442 |
T |
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Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 42859904 - 42860082
Alignment:
| Q |
1 |
ctccatccccatccttctttccacgacagatctccagaaacactcacatttgtcatctccttctcgttgtagtcatttatagatgttttttcctctttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |
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| T |
42859904 |
ctccatccccatccttctttccacgacagatctccataaacactcatatttgtcatctcctttccgttgta-tcatttataaatgttttttcctctttaa |
42860002 |
T |
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| Q |
101 |
atttcctttaaatcattaaattgaaaatcatgattgcaaaagattcaaatagtatgctatcttcgatttcaatttacaac |
180 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |
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| T |
42860003 |
attttctttaaatcattgaattgaaaatcatgattgcaaaagattcaaagagtatgctaccttcaatttcaatttacaac |
42860082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 10670738 - 10670560
Alignment:
| Q |
4 |
catccccatccttctttccacgacagatctccagaaacactcacatttgtcatctccttctcgttgtagtcatttata--gatgttttttcctctttaaa |
101 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||| ||||| ||||||| |||||| |
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| T |
10670738 |
catccccatccttctttccatgacagatctccagaaacactcacatttgccatctccttcccgttgtggtaatttatatagatgtgttttcctttttaaa |
10670639 |
T |
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| Q |
102 |
tttcctttaaatcattaaattgaaaatcatgattgcaaaagattcaaatagtatgctatcttcgatttcaatttacaac |
180 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
10670638 |
tttcctttaaatcattgaattgaaaatcatgattgcaaaagattcaaagagtatgctatcttcaatttcaatttacaac |
10670560 |
T |
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