View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9688_low_56 (Length: 225)

Name: NF9688_low_56
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9688_low_56
NF9688_low_56
[»] chr7 (3 HSPs)
chr7 (1-127)||(25470653-25470779)
chr7 (1-90)||(8759505-8759594)
chr7 (3-39)||(23402064-23402100)
[»] chr5 (7 HSPs)
chr5 (1-127)||(8762886-8763012)
chr5 (1-123)||(13888343-13888465)
chr5 (7-123)||(3014677-3014793)
chr5 (1-126)||(26412063-26412188)
chr5 (1-120)||(25654588-25654706)
chr5 (3-123)||(12080426-12080546)
chr5 (17-115)||(29766508-29766606)
[»] chr6 (3 HSPs)
chr6 (1-123)||(4487746-4487868)
chr6 (1-123)||(25441723-25441845)
chr6 (1-127)||(18306571-18306697)
[»] chr3 (9 HSPs)
chr3 (1-123)||(48154377-48154499)
chr3 (1-127)||(42664012-42664138)
chr3 (1-123)||(5125456-5125577)
chr3 (1-115)||(29923055-29923169)
chr3 (1-115)||(29972208-29972322)
chr3 (1-126)||(11019711-11019835)
chr3 (28-123)||(36689688-36689783)
chr3 (1-120)||(54607891-54608003)
chr3 (15-123)||(32180455-32180563)
[»] chr4 (6 HSPs)
chr4 (1-123)||(5914960-5915082)
chr4 (1-122)||(14246429-14246550)
chr4 (15-120)||(5813486-5813587)
chr4 (1-83)||(22721941-22722023)
chr4 (7-123)||(17612570-17612686)
chr4 (1-49)||(37795140-37795188)
[»] chr2 (10 HSPs)
chr2 (1-123)||(7565525-7565649)
chr2 (5-123)||(32652635-32652753)
chr2 (1-122)||(6357058-6357179)
chr2 (1-127)||(59405-59531)
chr2 (85-123)||(40912464-40912502)
chr2 (3-123)||(19093690-19093810)
chr2 (7-122)||(43445250-43445372)
chr2 (3-126)||(19073585-19073708)
chr2 (25-69)||(40912419-40912463)
chr2 (5-123)||(41644109-41644227)
[»] chr8 (2 HSPs)
chr8 (1-122)||(1872603-1872723)
chr8 (3-117)||(3038647-3038761)
[»] scaffold0312 (1 HSPs)
scaffold0312 (1-123)||(8231-8353)
[»] chr1 (5 HSPs)
chr1 (1-123)||(422219-422341)
chr1 (1-126)||(28012936-28013061)
chr1 (7-123)||(15964336-15964452)
chr1 (3-61)||(47555053-47555111)
chr1 (1-61)||(7843083-7843143)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 25470779 - 25470653
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||    
T  25470779 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgatggaccaccgtaacactaaattt 25470680  T
Q  101 tactttattacaaatcagtcctcgtac 127  Q
    |||||||||||||||||||||||||||    
T  25470679 tactttattacaaatcagtcctcgtac 25470653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8759594 - 8759505
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaa 90  Q
    |||||||||||| ||||||||||||| |||| |||||| |||| ||||| ||| ||||||||| ||||| ||| ||||||||| ||||||    
T  8759594 aatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttttgatggaccactgtaa 8759505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 23402064 - 23402100
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatag 39  Q
    |||||||||||||||||| |||||||||| |||||||    
T  23402064 tgacttttttaaaaaagttattttgtttagccaatag 23402100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 8762886 - 8763012
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||    
T  8762886 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgatggaccaccgtaacactaaattt 8762985  T
Q  101 tactttattacaaatcagtcctcgtac 127  Q
    |||||||||||||||||||||||||||    
T  8762986 tactttattacaaatcagtcctcgtac 8763012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 13888465 - 13888343
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  13888465 aatgacttttttaaaaaagtcattttatttaaccaattgcatagttgtttatgccatgtcagctagtgtctttgtgatggacccctgtaacactaaattt 13888366  T
Q  101 tactttattacaaatcagtcctc 123  Q
    |||||||||| ||||||||||||    
T  13888365 tactttattataaatcagtcctc 13888343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 3014793 - 3014677
Alignment:
Q  7 ttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttacttt 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||||    
T  3014793 tttttttaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagttagtgtctttgtgatggaccactgtaacactaaattttacttt 3014694  T
Q  107 attacaaatcagtcctc 123  Q
    ||||||||||| |||||    
T  3014693 attacaaatcaatcctc 3014677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 26412188 - 26412063
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||| ||| ||||||||||||| |||| ||||||||||  ||||| ||| ||||||||| | | | |||||||||||||  ||||| ||||||||     
T  26412188 aatgacttatttgaaaaagtcattttatttagccaatagcatgattgttgatgtcatgtcagctaatatctttgtgatggaccattgtaagactaaatta 26412089  T
Q  101 tactttattacaaatcagtcctcgta 126  Q
    ||  ||||| ||||||||||||||||    
T  26412088 tatcttattgcaaatcagtcctcgta 26412063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 25654706 - 25654588
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||| |||||| |||||||||||||||||| ||| ||||| |||  |||||| | ||||| ||  ||||||||| || ||| |||||| ||    
T  25654706 aatgacttttttagaaaagttattttgtttaaccaatagtataattgttgatg-tatgtcaactagtgtattattgatggaccactctaaaactaaactt 25654608  T
Q  101 tactttattacaaatcagtc 120  Q
    ||| ||||||||||||||||    
T  25654607 taccttattacaaatcagtc 25654588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 12080426 - 12080546
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    |||||||||| ||||||| ||||||||||  | ||| |||| ||||| ||| ||||||||| |||||  |  || |||||| || ||| |||||| ||||    
T  12080426 tgacttttttgaaaaagttattttgtttagtcgataacataattgttgatgtcatgtcagctagtgtcctgctggtggaccactttaagactaaacttta 12080525  T
Q  103 ctttattacaaatcagtcctc 123  Q
    | |||||||||||||||||||    
T  12080526 ccttattacaaatcagtcctc 12080546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 29766508 - 29766606
Alignment:
Q  17 aagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaat 115  Q
    |||| ||||| |||| ||||||| |||  |||| ||||||||||| | |||||| |  ||||||||| || ||| |||||| ||||| |||||||||||    
T  29766508 aagttattttatttatccaatagtataactgttaatgccatgtcaactagtgttctactgatggaccactctaagactaaactttaccttattacaaat 29766606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 4487746 - 4487868
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  4487746 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaattt 4487845  T
Q  101 tactttattacaaatcagtcctc 123  Q
    |||||||||||||||||||||||    
T  4487846 tactttattacaaatcagtcctc 4487868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 25441845 - 25441723
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||| ||||||||||||||||    
T  25441845 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgtcatgttagctagtgtctttgtgatggaccactgtaacactaaattt 25441746  T
Q  101 tactttattacaaatcagtcctc 123  Q
    |||||||| ||||||||||||||    
T  25441745 tactttatcacaaatcagtcctc 25441723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 18306571 - 18306697
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||  ||| ||||||||||||| ||||||| |||  |||| ||||||||||||| ||||| ||  ||||||||| |||| | |  ||||||    
T  18306571 aatgacttttttggaaatgtcattttgtttagccaatagaataaatgttgatgccatgtcagctagtgtcttgctgatggaccactgttagatcaaattt 18306670  T
Q  101 tactttattacaaatcagtcctcgtac 127  Q
    ||| ||||||||||||| |||||||||    
T  18306671 taccttattacaaatcaatcctcgtac 18306697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 48154377 - 48154499
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  48154377 aatgacttttttaaaaaaatcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaattt 48154476  T
Q  101 tactttattacaaatcagtcctc 123  Q
    |||||||||||||||||||||||    
T  48154477 tactttattacaaatcagtcctc 48154499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 42664012 - 42664138
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||  ||||||| ||||| ||||  |||||| ||||||||| ||| ||||||||| ||||| ||||||||  ||| |||||| |||||||||    
T  42664012 aatgactttttagaaaaagttattttatttagtcaatagtatagttgttgatgtcatgtcagctagtgtctttgtgataaaccactgtaagactaaattt 42664111  T
Q  101 tactttattacaaatcagtcctcgtac 127  Q
    |||||||||||||||||||||||||||    
T  42664112 tactttattacaaatcagtcctcgtac 42664138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 5125577 - 5125456
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||| ||||| ||||||||||| |||| ||||| ||||||||||||| ||||| ||||||||||||| |||||| |||||| |     
T  5125577 aatgacttttttgaaaaagttattttatttaaccaataacataattgttaatgccatgtcagctagtgtctttgtgatggaccactgtaagactaaa-ta 5125479  T
Q  101 tactttattacaaatcagtcctc 123  Q
    ||  |||||||||||||||||||    
T  5125478 tatcttattacaaatcagtcctc 5125456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 29923055 - 29923169
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| |||||| ||||| |||||| || |||||||||||||    || ||||||||||||| || ||| |||||||||    
T  29923055 aatgactttttttaaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatggaccactataaaactaaattt 29923154  T
Q  101 tactttattacaaat 115  Q
    |||||||||||||||    
T  29923155 tactttattacaaat 29923169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 29972208 - 29972322
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| |||||| ||||| |||||| || |||||||||||||    || ||||||||||||| || ||| |||||||||    
T  29972208 aatgactttttttaaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatggaccactataaaactaaattt 29972307  T
Q  101 tactttattacaaat 115  Q
    |||||||||||||||    
T  29972308 tactttattacaaat 29972322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 11019835 - 11019711
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||| |||||| ||||||||||||| |||| ||||||||||  ||||| |||  |||| ||| ||||| ||||||||||||| || ||| |||||||||    
T  11019835 aatgatttttttgaaaaagtcattttatttagccaatagcatgattgtt-atgtaatgttagctagtgtctttgtgatggaccactctaagactaaattt 11019737  T
Q  101 tactttattacaaatcagtcctcgta 126  Q
    ||  ||||||||||||||||||||||    
T  11019736 tatcttattacaaatcagtcctcgta 11019711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 36689783 - 36689688
Alignment:
Q  28 tttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaatcagtcctc 123  Q
    ||||||||||| |||||||||| ||| ||||||||| ||||| ||  ||||||||| | |||| |||||| ||||||||||||||||| |||||||    
T  36689783 tttaaccaataacatagttgttgatgtcatgtcagctagtgtcttgttgatggaccaccgtaaaactaaactttactttattacaaataagtcctc 36689688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 54608003 - 54607891
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| |||| |||||| |||| ||||| |||||||||      |||| ||||||||||||| |||||| |||||| |     
T  54608003 aatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgccatgt------gtgtctttgtgatggaccactgtaagactaaa-ta 54607911  T
Q  101 tactttattacaaatcagtc 120  Q
    ||  ||||||||||||||||    
T  54607910 tatcttattacaaatcagtc 54607891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 32180455 - 32180563
Alignment:
Q  15 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaa 114  Q
    |||||| |||||||||| ||||||| |||  || | ||| |||||| || |||||  |  || |||||| || ||| |||||| ||||| ||||||||||    
T  32180455 aaaagttattttgtttagccaatagtataactgctgatgtcatgtcggctagtgtcctgctggtggaccactctaaaactaaactttaccttattacaaa 32180554  T
Q  115 tcagtcctc 123  Q
    |||||||||    
T  32180555 tcagtcctc 32180563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 5914960 - 5915082
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  5914960 aatgacttttttaaaaaagtcattttgtttaaccaatagcaaagttgttcataccatgtcagctagtgtctttgtgatggaccactgtaacactaaattt 5915059  T
Q  101 tactttattacaaatcagtcctc 123  Q
    ||||||||||||||| |||||||    
T  5915060 tactttattacaaattagtcctc 5915082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 14246550 - 14246429
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| |||| ||||||||||| || || |||||||||||||   ||| ||||||||||||| || ||| |||||||||    
T  14246550 aatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgatggaccactataagactaaattt 14246451  T
Q  101 tactttattacaaatcagtcct 122  Q
    ||||||||||||||| ||||||    
T  14246450 tactttattacaaataagtcct 14246429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 5813587 - 5813486
Alignment:
Q  15 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaa 114  Q
    ||||||||||||||||| ||||||||   ||| || ||||||||||||  ||||| ||| ||||||||| |||||| |||||| |||||||||||| |||    
T  5813587 aaaagtcattttgtttagccaatagc---gttcttgatgccatgtcagttagtgtctttatgatggaccactgtaagactaaa-tttactttattaaaaa 5813492  T
Q  115 tcagtc 120  Q
    | ||||    
T  5813491 taagtc 5813486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22721941 - 22722023
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggacc 83  Q
    ||||||||||||  ||||||||||||||||| ||||| | |||  |||| ||||||||||||| ||||| ||  |||||||||    
T  22721941 aatgacttttttggaaaagtcattttgtttagccaatggaataaatgttgatgccatgtcagctagtgtcttgttgatggacc 22722023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 17612686 - 17612570
Alignment:
Q  7 ttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttacttt 106  Q
    |||||| ||||||| ||||| |||| ||||||| |||  |||  ||| ||||||||| |||||  |  || |||||| || ||| |||||||||||| ||    
T  17612686 ttttttgaaaaagttattttatttagccaatagtataactgtcgatgtcatgtcagctagtgtcctgttggtggaccactctaaaactaaattttacctt 17612587  T
Q  107 attacaaatcagtcctc 123  Q
    ||||||||| |||||||    
T  17612586 attacaaattagtcctc 17612570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37795188 - 37795140
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgtt 49  Q
    ||||||| |||| |||||||||||||||| | |||||| ||||||||||    
T  37795188 aatgactcttttgaaaaagtcattttgttcagccaatatcatagttgtt 37795140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 7565649 - 7565525
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  7565649 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaattt 7565550  T
Q  101 ta--ctttattacaaatcagtcctc 123  Q
    ||   ||||||||||||||||||||    
T  7565549 tattttttattacaaatcagtcctc 7565525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 32652753 - 32652635
Alignment:
Q  5 acttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttact 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| || | ||| |||||||||||    
T  32652753 acttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatagaccactatgacattaaattttact 32652654  T
Q  105 ttattacaaatcagtcctc 123  Q
    |||||||||||||||||||    
T  32652653 ttattacaaatcagtcctc 32652635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 6357179 - 6357058
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||  |||| ||||||||||| || || |||||||||||||   ||| ||||||||||||| || ||| |||||||||    
T  6357179 aatgacttttttgaaaaagtcatttaatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgatggaccactataagactaaattt 6357080  T
Q  101 tactttattacaaatcagtcct 122  Q
    |||||||||| |||| ||||||    
T  6357079 tactttattataaataagtcct 6357058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 59531 - 59405
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||| ||||| |||| ||||| ||||| || || ||||||||||||| | ||  ||  |||||||||   |||| |||||||||    
T  59531 aatgacttttttgaaaaagttattttatttagccaattgcataattattgatgccatgtcagctaatggcttcttgatggaccaacgtaagactaaattt 59432  T
Q  101 tactttattacaaatcagtcctcgtac 127  Q
    ||  |||||| ||||||||| ||||||    
T  59431 tatcttattataaatcagtcatcgtac 59405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 40912464 - 40912502
Alignment:
Q  85 ctgtaacactaaattttactttattacaaatcagtcctc 123  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40912464 ctgtaacactaaattttactttattacaaatcagtcctc 40912502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 19093810 - 19093690
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    |||||||||||||||||| | ||||||||| |||||| ||| ||||| |||  || ||| | ||||| ||  ||  ||||| || ||| |||||| ||||    
T  19093810 tgacttttttaaaaaagttaatttgtttaatcaatagtataattgttgatgttatctcaactagtgtcttgttggaggaccactctaaaactaaacttta 19093711  T
Q  103 ctttattacaaatcagtcctc 123  Q
    | |||||||||||||||||||    
T  19093710 ccttattacaaatcagtcctc 19093690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 43445250 - 43445372
Alignment:
Q  7 ttttttaaaaaagtcattttgtttaaccaatagcatagttgttca-------tgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatt 99  Q
    ||||| |||||||||||||| |||| ||||||| ||||||||| |       ||||||||||   | |||||||  |||||||| | |||| ||||||||    
T  43445250 tttttaaaaaaagtcattttatttagccaatagaatagttgttaacttgttatgccatgtcaattaatgtttttcggatggaccaccgtaagactaaatt 43445349  T
Q  100 ttactttattacaaatcagtcct 122  Q
    |||||||||||||||| ||||||    
T  43445350 ttactttattacaaattagtcct 43445372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 19073708 - 19073585
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    ||||||||||  |||||| ||||| ||||  |||||| ||| ||||| ||| ||||||||  |||||  |  || || ||| || ||| |||||||||||    
T  19073708 tgacttttttgtaaaagttattttatttagtcaatagtataattgttgatgtcatgtcagtcagtgtcctgctggtgaaccactttaaaactaaatttta 19073609  T
Q  103 ctttattacaaatcagtcctcgta 126  Q
    | ||||||||||||||||||||||    
T  19073608 ccttattacaaatcagtcctcgta 19073585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 40912419 - 40912463
Alignment:
Q  25 ttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgt 69  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||    
T  40912419 ttgtttaaccgatagaatagttgttcatgccatgtcagctagtgt 40912463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 41644227 - 41644109
Alignment:
Q  5 acttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttact 104  Q
    |||||||| |||||   |||||||||| ||||||  ||| ||||| ||| ||||||||| |||||  |  || |||||| || ||| |||||| | |||     
T  41644227 acttttttgaaaaatatattttgtttagccaataatataattgttgatgtcatgtcagctagtgtcatgctggtggaccactctaaaactaaactctacc 41644128  T
Q  105 ttattacaaatcagtcctc 123  Q
    |||||||||||||||||||    
T  41644127 ttattacaaatcagtcctc 41644109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 1872603 - 1872723
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| |||||||||||||||| | ||| || |||||||||| ||||||||||||| | ||| ||||||||||| |  ||||| || ||||||    
T  1872603 aatgacttttttgaaaaagtcattttgttcagccattaacatagttgttgatgccatgtcagctaatgtctttgtgatgga-cattgtaaaaccaaattt 1872701  T
Q  101 tactttattacaaatcagtcct 122  Q
    |||||||||| |||||||||||    
T  1872702 tactttattataaatcagtcct 1872723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 3038761 - 3038647
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    |||||||||||||||| | |||||||||| ||||||| | | ||| | ||| ||||||| | ||||| ||  || |||||| || ||| |||||| ||||    
T  3038761 tgacttttttaaaaaaattattttgtttagccaatagtagaattgctgatgtcatgtcaacaagtgtcttgctggtggaccactctaaaactaaacttta 3038662  T
Q  103 ctttattacaaatca 117  Q
    | |||||||||||||    
T  3038661 ccttattacaaatca 3038647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 8231 - 8353
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||| ||| ||  ||||||||| | ||| ||  ||||||||| || ||  |||||| ||    
T  8231 aatgacttttttgaaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgttgatggaccactctacgactaaactt 8330  T
Q  101 tactttattacaaatcagtcctc 123  Q
    ||||||||||||| | |||||||    
T  8331 tactttattacaacttagtcctc 8353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 422341 - 422219
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||| ||| ||  ||||||||| | ||| ||  ||||||||| || ||  |||||| ||    
T  422341 aatgacttttttgaaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgttgatggaccactctacgactaaactt 422242  T
Q  101 tactttattacaaatcagtcctc 123  Q
    ||||||||||||| | |||||||    
T  422241 tactttattacaacttagtcctc 422219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 28013061 - 28012936
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||| ||||||| ||||||| |||||| ||| ||||||||||| ||||| ||| ||||||||| ||||| ||  |||| ||||   | || | |||| ||    
T  28013061 aatgtcttttttgaaaaagttattttggttagccaatagcataattgttgatgtcatgtcagctagtgtcttgctgatagaccatcgcaagagtaaactt 28012962  T
Q  101 tactttattacaaatcagtcctcgta 126  Q
    ||| ||||||||||||||||||||||    
T  28012961 taccttattacaaatcagtcctcgta 28012936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 15964452 - 15964336
Alignment:
Q  7 ttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttacttt 106  Q
    ||||||| |||| | |||||||||| ||||||| |||  |||  ||| ||||||||| |||||  |  | ||| ||| || ||| |||||||||||| ||    
T  15964452 ttttttagaaaaattattttgtttagccaatagtataactgtcgatgtcatgtcagctagtgtcctactaatgtaccactctaaaactaaattttacctt 15964353  T
Q  107 attacaaatcagtcctc 123  Q
    |||||||||||||||||    
T  15964352 attacaaatcagtcctc 15964336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 47555111 - 47555053
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtca 61  Q
    |||||||||| ||||||| |||||||||||||||||| |||  |||| | |||||||||    
T  47555111 tgacttttttgaaaaagttattttgtttaaccaatagtataactgttgaggccatgtca 47555053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7843143 - 7843083
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtca 61  Q
    |||||||||||| ||||||| |||||| ||  ||||||||||| ||||| |||| ||||||    
T  7843143 aatgactttttttaaaaagttattttggttggccaatagcataattgttgatgcaatgtca 7843083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University