View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_6 (Length: 425)
Name: NF9688_low_6
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 64 - 401
Target Start/End: Complemental strand, 14746202 - 14745865
Alignment:
| Q |
64 |
aatatatattcagctggagccacataacctttcagagaggtgcttttctttctctaaatctaaatattcaagaactccaaaacttaaggtgttcttcttt |
163 |
Q |
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| T |
14746202 |
aatatatattcagctggagccacataaccttttagagaggtgcttttgtttctctaaatctaaatattcaagaattccaaaacttaaggtgttcttcttt |
14746103 |
T |
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| Q |
164 |
cttgtactttgttctctatttgttagtttctcactttctctaatgtaacaagtttgcctgtcatcatatgttaatgtcgagtttaagatagtatttatct |
263 |
Q |
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| T |
14746102 |
cttgtactttgttctctatttgttagtttctcactttctctaatgtaacaagtttgcctgtcatcatatgttaaggtcgagtttaagatagtatttatct |
14746003 |
T |
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| Q |
264 |
ctatatgctatggtatcctacttttctaattagtaatttgaaatttaatgcatatcgtatgctaaatgatattgttttcacctgcagggtcttaaaggca |
363 |
Q |
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| T |
14746002 |
ctatatgatatggtatcctacttttctaattagtaatttgaaatttaatgcatatcttatgctaaatgatattgttttcacctgcagtgtcttaaaggca |
14745903 |
T |
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| Q |
364 |
tcgcagaaacctacattcaagaactgacacagacttca |
401 |
Q |
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| T |
14745902 |
tcgcagaaacctacattcaagaactgacacagacttca |
14745865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 14743179 - 14743051
Alignment:
| Q |
48 |
atgatgttacttaataaatatatattcagctggagccacataacctttcagagaggtgcttttctttctctaaatctaaatattcaagaactccaaaact |
147 |
Q |
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| T |
14743179 |
atgatgttaattaataaatatttattcagcaggagcgacat---------gagaggtgcttttgtttctctaaatctaaatattcaaaatctccaaaact |
14743089 |
T |
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| Q |
148 |
taaggtg-ttcttctttcttgtactttgttctctattt |
184 |
Q |
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| T |
14743088 |
taaggtgtttcttatttcttgtactttgttctctattt |
14743051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 14743038 - 14742932
Alignment:
| Q |
297 |
taatttgaaatttaatgcatatcgtatgctaaatgatattgttttcacctgcagggtcttaaaggcatcgc---agaaacctacattcaag-aactgaca |
392 |
Q |
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| T |
14743038 |
taatttgaaatttaatacatatcttatgctaaatgatattgttttcgcctacagggtcttaaaggcattgcagaagaaacctacattcaagaaactgaca |
14742939 |
T |
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| Q |
393 |
cagactt |
399 |
Q |
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| T |
14742938 |
cggactt |
14742932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 378
Target Start/End: Original strand, 14289623 - 14289789
Alignment:
| Q |
210 |
aacaagtttgcctgtcatcatatgttaatgtcgagtttaagatagtatttatctctatatgctatggtatcctacttttctaattagtaatttgaaattt |
309 |
Q |
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| T |
14289623 |
aacaagtttggttgtcatcatatgttaatatggactt-aagacaatacttatctctatatgctacggtgtccttctttcctaatttgtaatttgaaattt |
14289721 |
T |
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| Q |
310 |
aatgcatatcgtatgctaaatgatattgttttcacctgcagggtcttaaaggcatcgcagaaacctaca |
378 |
Q |
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| T |
14289722 |
aacaaatattgtacgctaagcgatattcttttca-attcagggtcttaaagtcattggagaaatctaca |
14289789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 15056746 - 15056677
Alignment:
| Q |
211 |
acaagtttgcctgtcatcatatgttaatgtcgagtttaagatagtatttatctctatatgctatggtatc |
280 |
Q |
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| T |
15056746 |
acaagtttggctgtcatcatatgttagtatggagtttaagacaatttttatctctatatgctatggtatc |
15056677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 383
Target Start/End: Original strand, 15052323 - 15052411
Alignment:
| Q |
295 |
agtaatttgaaatttaatgcatatcgtatgctaaatgatattgttttcacctgcagggtcttaaaggcatcgcagaaacctacattcaa |
383 |
Q |
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||||||||||||||||| ||||| || |||||||| ||| ||||| ||||| |||||||||||| |||| |||||||||||||||| |
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| T |
15052323 |
agtaatttgaaatttaacacatattgtgtgctaaattatactgtttccacctacagggtcttaaatgcatgagagaaacctacattcaa |
15052411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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