View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9688_low_61 (Length: 205)
Name: NF9688_low_61
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_61 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 45844635 - 45844463
Alignment:
| Q |
18 |
ggagatatgacaggtataaggggaatcaagcggccccataagacaaattttaacttttccacttagacaatctagattttaaatggtcaataactggaat |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |||||||||||||||| |
|
|
| T |
45844635 |
ggagacatgacaggtataaggggaatcaagcggccccataagacaaatttcaacttttccacttagacagtctaaattttaaacggtcaataactggaat |
45844536 |
T |
|
| Q |
118 |
ggaataaagttatgttctactgtttggattgtgaaaaaatgatggaatggaatggtatccaatggaatctatt |
190 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45844535 |
ggaataaagttatgttctattgtttggattgtgaaaaaatgatggaatggaatggtatccaatggaatctatt |
45844463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 14538360 - 14538431
Alignment:
| Q |
40 |
gaatcaagcggccccataagacaaattttaacttttccacttagacaatctagattttaaatggtcaataac |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
14538360 |
gaatcaagcgaccccataagacaaatttctgcttttccactccgacagtctagattttaaacggtcaataac |
14538431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 13639977 - 13639910
Alignment:
| Q |
34 |
taaggggaatcaagcgg-ccccataagacaaattttaacttttccacttagacaatctagattttaaa |
100 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
13639977 |
taaggagaatcaagcggtccccataagacaaatttatgcttttccactaagacaatctagattataaa |
13639910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 41137914 - 41137989
Alignment:
| Q |
113 |
ggaatggaataaagttatgttctactgtttggattgtgaaaaa-atgatggaatggaatggtatccaatggaatct |
187 |
Q |
| |
|
|||||||||||||||| ||||| | |||| ||||||| ||||| ||||| ||||||||||| || |||||| |||| |
|
|
| T |
41137914 |
ggaatggaataaagttgtgttccattgttcggattgtaaaaaacatgatagaatggaatggaattcaatggtatct |
41137989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University