View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_9 (Length: 396)
Name: NF9688_low_9
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 46 - 386
Target Start/End: Original strand, 15302690 - 15303031
Alignment:
| Q |
46 |
ttagcaccctaaattttaaactatgctttg-caggtttttgctactcctgaagcaagttttggatttcatactgattgtggcttctcatactatcattct |
144 |
Q |
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| T |
15302690 |
ttagcatcctaaattttagaaaatgctttgacaggtttttgctactcctgaagcaagttttggatttcataccgattgtggtttctcatactatcattct |
15302789 |
T |
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| Q |
145 |
cgtttgccagggtatttaggtaaccacgatctcacaaagaattccttttatgattccatgacagcaaagtgtaaatgaaatatttcatgaattagcataa |
244 |
Q |
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| T |
15302790 |
cgtttgccagggtatttaggtaaccacaatctcacaaagaattctttttaagattctatgacagcaaagtgtaaatgaaatttttcataaattaggataa |
15302889 |
T |
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| Q |
245 |
aatgttttgaaaatgaagaaaaagaaacacattactccctcagttgtaaaactattgattgatcaatgacatttaatttccgtgatcgtttgtatcgtgg |
344 |
Q |
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||||||||||||||| ||| ||||||||||||||| | |||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
15302890 |
aatgttttgaaaatggagagaaagaaacacattacatcttcagttctaaaactattgattggtcaatgccatttaatttccgtgatcgtttgtatcgtgg |
15302989 |
T |
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| Q |
345 |
aaataaaggcgtttgtatcaattaaatatttcttaatctgtg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
15302990 |
aaataaaggcgtttgtatcaattaaatatttcttaatctgtg |
15303031 |
T |
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