View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9689_high_1 (Length: 404)
Name: NF9689_high_1
Description: NF9689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9689_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 34986105 - 34986481
Alignment:
| Q |
20 |
agaacaccatatcagccgcatcaggaatatcatatccttcaaagcatctcttgttcctattataggactgatttagtcacatgctccggttcattgacaa |
119 |
Q |
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| T |
34986105 |
agaacaccatatcagccgcaccaggaatatcatatccttcaaagcatctcttgttcctattataggactgatttagtcacatgctccggttcattgacaa |
34986204 |
T |
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| Q |
120 |
tccgcttgttcaaagagaaaacattaagagaagaagcaaaccacacccttcacatccagttacaatccataaaatcaaccgcaagcctaatcaatcgtac |
219 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986205 |
tccacttgttcaaagagaaaacattaagagaagaagcaaaccacacccttcacatccagttacaatccataaaatcaaccgcaagcctaatcaatcgtac |
34986304 |
T |
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| Q |
220 |
atgacacaccatataagctgaacatgacgtgatattggtcttgagattccaaagtttggatcatatattctatttaataactatgagttacacatagttt |
319 |
Q |
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| T |
34986305 |
atgacacgccatataagctgaacatgacgtgatattggtcttgagattccaaagtttggatcatatattctatttaataactatgagttacacatagttt |
34986404 |
T |
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| Q |
320 |
ttgtccttgtaaaatcagcatgagttttaatctatgatcctagctctttagcttccactttgtagtatttctctgct |
396 |
Q |
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| T |
34986405 |
ttgtccttgtaaaatcagcatgagttttaatctatgatcctagctctttagcttccactttgtagtatttctctgct |
34986481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 34992924 - 34993289
Alignment:
| Q |
20 |
agaacaccatatcagccgcatcaggaatatcatatccttcaaagcatctcttgttcctattataggactgatttagtcacatgctccggttcattgacaa |
119 |
Q |
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| T |
34992924 |
agaacaccatatcagccgcaccaggaatatcatatccttcaaagcatctcttgttcctattataggactgatttagtcacatgctccggttcattgacaa |
34993023 |
T |
|
| Q |
120 |
tccgcttgttcaaagagaaaacattaagagaagaagcaaaccacacccttcacatccagttacaatccataaaatcaaccgcaagcctaatcaatcgtac |
219 |
Q |
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| T |
34993024 |
t-cacttgttcaatgagcaaacattaagagaagaagcagaccacacccttctcgtccggttacaatccataaaattaaccgggagtctaatcaattgtac |
34993122 |
T |
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| Q |
220 |
atgacacaccatataagctgaacatgacgtgatattggtcttgagattccaaagtttggatcatatattctatttaataactatgagttacacatagttt |
319 |
Q |
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| T |
34993123 |
aagatacgccacataaggtgaacataacgtgaga-tggtcttgagattccaaagtttggaccatatgttctatttaat-actatgagttgcacatagttt |
34993220 |
T |
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| Q |
320 |
ttgtccttgtaaaatcagcatgagttttaatctatgatcctagctctttagcttccactttgtagtatt |
388 |
Q |
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| T |
34993221 |
ttgtccttgtaaaatcagcatgagttttaatctatggtcctagctctttagcatccactttgtagtatt |
34993289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 34986511 - 34986563
Alignment:
| Q |
297 |
taactatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaa |
349 |
Q |
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| T |
34986511 |
taactatgagttacacatagtttttgtccttgtaaaatcagcatgagatttaa |
34986563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 19326104 - 19326167
Alignment:
| Q |
319 |
tttgtccttgtaaaa-tcagcatgagttttaatctatgatcctagctctttagcttccactttg |
381 |
Q |
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| T |
19326104 |
tttgtccttgtaaaaatcaccatgagttttaatctatagtcctagctctttagcttcctctttg |
19326167 |
T |
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