View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9689_high_4 (Length: 354)
Name: NF9689_high_4
Description: NF9689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9689_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 17744826 - 17745151
Alignment:
| Q |
17 |
cagttaccacactccattcaatgcttgcttcacttggtgcataaaaatttggactagtgcaaccagaagcaacatgtgatgttgttgttcttgataaaaa |
116 |
Q |
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| T |
17744826 |
cagttaccacactccattcaatgcttgcttcacttggtgcataaaaatttggactagtgcaaccagaagcaacatgtgatgttgttgttcttgataaaaa |
17744925 |
T |
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| Q |
117 |
tgagcttgttttattaccagtgaaactttcaatctcaaataaatctgaacttgcatcacttccaannnnnnnnnnnnnnnnnnnncaatttgtagaaaaa |
216 |
Q |
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| T |
17744926 |
tgagcttgttttattaccagtgaagctttcaatctcaaataaatctgaacttgcatcacttccaacatcatcatcatcatcatcacaatttgtagaaaaa |
17745025 |
T |
|
| Q |
217 |
tcaatttcttgttcttcaagtttagtagcagcttcccaagatggtatttttagcctcatatcaaagcttattgacttgcatctttcatctaatattggtg |
316 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17745026 |
tcaatttcttgttcttcaagttttgaagcagcttcccaagatggtatttttagtctcatatcaaagcttattgacttgcatctttcatctaatattggtg |
17745125 |
T |
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| Q |
317 |
aaccaaacacttccaatgttttcctt |
342 |
Q |
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| T |
17745126 |
aaccaaacacttccaatgttttcctt |
17745151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 24336907 - 24336875
Alignment:
| Q |
145 |
tcaatctcaaataaatctgaacttgcatcactt |
177 |
Q |
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| T |
24336907 |
tcaatctcaaataaatctgaacttgcatcactt |
24336875 |
T |
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