View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9689_high_8 (Length: 239)
Name: NF9689_high_8
Description: NF9689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9689_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 39241372 - 39241176
Alignment:
| Q |
7 |
caaacaagcctacctaattagttaatgatcagcttcaatatagtgtatatattactcaatattaatacttaatattaattagaatagatctttgtgcttg |
106 |
Q |
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| T |
39241372 |
caaacaagcctacctaattagttaatgattagcttcaatatagtgtatatattactcaatattaatacttaatattaattagaatagatctttgtgcttg |
39241273 |
T |
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| Q |
107 |
aggtttgaatttctaggaatttagttgtatactttttgtaagagaaactgactatgagactacaatgtattataaatttatagaaatcagttcttct |
203 |
Q |
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| T |
39241272 |
aggtttgaatttctaggaatttagttgtatactttttgtaagaaaaactgactatgagactacaatgtattataaatttatagaaatcagttcttct |
39241176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 39241133 - 39241093
Alignment:
| Q |
176 |
ttataaatttatagaaatcagttcttctacccaaaagaacc |
216 |
Q |
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| T |
39241133 |
ttataaatttatagaaatcagttcttctacccaaaagaacc |
39241093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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