View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9689_high_9 (Length: 231)
Name: NF9689_high_9
Description: NF9689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9689_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 34686615 - 34686816
Alignment:
| Q |
13 |
cagagaccaaaatgactatcac--atagtatagtatatatctaacttaccctatgcgcattccagcatgaccagtggttttggagacagtaaaaagggtt |
110 |
Q |
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| T |
34686615 |
cagagaccaaaatgaccatcactcatagtata----atatctaacttaccctatgcgcattccagcatgaccagtgcttttggagacagtaaaaagggtt |
34686710 |
T |
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| Q |
111 |
agatcatgatcagaaggcgatgatataggagtgtattgcggccagtagtaggcaagatcatgaaccagaagtccttgacttctattgaccttagacttcc |
210 |
Q |
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| T |
34686711 |
agatcatgatcagaaggcgatgatataggagtgtattgcggccagtagtaggcaagatcatgaaccagaagtccttgacttctattgaccttagacttcc |
34686810 |
T |
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| Q |
211 |
tcacat |
216 |
Q |
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|||||| |
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| T |
34686811 |
tcacat |
34686816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 43612595 - 43612712
Alignment:
| Q |
55 |
cttaccctatgcgcattccagcatgaccagtggttttggagacagtaaaaagggttagatcatgatcagaaggcgatgatataggagtgtattgcggcca |
154 |
Q |
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| T |
43612595 |
cttaccctatgcgcgttccagcgtgaccggtgctttttgagacagtgaaaagagtaagatcataatctgaagcaaatagtattggagtgtattgtggcca |
43612694 |
T |
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| Q |
155 |
gtagtaggcaagatcatg |
172 |
Q |
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| T |
43612695 |
ataataggcaaggtcatg |
43612712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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