View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9689_low_1 (Length: 413)

Name: NF9689_low_1
Description: NF9689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9689_low_1
NF9689_low_1
[»] chr2 (4 HSPs)
chr2 (5-218)||(43150512-43150724)
chr2 (124-218)||(11460324-11460417)
chr2 (120-218)||(19251913-19252013)
chr2 (120-214)||(34236472-34236566)
[»] chr1 (4 HSPs)
chr1 (120-218)||(926510-926608)
chr1 (123-194)||(5108515-5108586)
chr1 (123-203)||(46526685-46526765)
chr1 (124-218)||(43912261-43912354)
[»] chr6 (1 HSPs)
chr6 (120-210)||(16266793-16266883)
[»] chr8 (3 HSPs)
chr8 (120-218)||(10442115-10442213)
chr8 (120-218)||(16906855-16906953)
chr8 (124-218)||(22570055-22570148)
[»] chr4 (1 HSPs)
chr4 (120-208)||(2366033-2366121)
[»] chr7 (4 HSPs)
chr7 (123-218)||(1382258-1382353)
chr7 (123-218)||(1388363-1388458)
chr7 (120-218)||(23741143-23741241)
chr7 (120-217)||(42951329-42951426)
[»] chr3 (1 HSPs)
chr3 (135-218)||(1106439-1106522)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 43150724 - 43150512
Alignment:
Q  5 gcttattccaaaaatcatgagacccaatctaatatatggaat--gagtggattgtagttattaacccttcgattttttaatatttacaaagatgagataa 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43150724 gcttattccaaaaatcatgagacccaatctaatatgtggaatatgagtggattgcagttattaacccttcgattttttaatatttacaaagatgagataa 43150625  T
Q  103 gaattggacaaccattgaaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaa 202  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||    
T  43150624 gaattggacaaccattgaaccattcaagac---agaagatcaagaaacatgtcccaagtcatattctataccctataaatctgaaatttgcttaacaaaa 43150528  T
Q  203 caccccacttgttttt 218  Q
    || |||||||||||||    
T  43150527 catcccacttgttttt 43150512  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 11460417 - 11460324
Alignment:
Q  124 attcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 218  Q
    |||||||||||||||||||||||||||  ||| |||| || ||| | ||| |||||||||||||||||||| ||||||||| |||||||||||||    
T  11460417 attcaagacagtagaagatcaagaaaccggtcccaagccacattatttgccctataaatctgaaatttgctcaacaaaaca-cccacttgttttt 11460324  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 19251913 - 19252013
Alignment:
Q  120 aaccattcaagacagtagaagatcaagaaacat--gtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgtttt 217  Q
    |||||||||| |||||||||||| || ||| |   ||| ||||||||||||| ||| |||||||||| ||| ||||| ||||||||||||||||| ||||    
T  19251913 aaccattcaaaacagtagaagataaaaaaaaaccagtcgcaagtcatattctttgccctataaatctaaaacttgctcaacaaaacaccccacttatttt 19252012  T
Q  218 t 218  Q
    |    
T  19252013 t 19252013  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 34236566 - 34236472
Alignment:
Q  120 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgt 214  Q
    |||||||||||||| ||||||||||||||||  ||| |||| |||||| | |||  ||||||| |||||  | || |||  ||||||||||||||    
T  34236566 aaccattcaagacattagaagatcaagaaaccagtcccaagccatattgtttgccttataaatttgaaacgtcctcaacggaacaccccacttgt 34236472  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 926510 - 926608
Alignment:
Q  120 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 218  Q
    ||||| |||||| | ||||||||||||||||  ||| |||| |||||||| |||||||||||||||||| ||| | |||||||||||||||||||||||    
T  926510 aaccactcaagatattagaagatcaagaaaccagtcccaagccatattctttgctctataaatctgaaacttgttcaacaaaacaccccacttgttttt 926608  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 5108515 - 5108586
Alignment:
Q  123 cattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgct 194  Q
    |||| |||||| ||||||||||||||||| ||| | ||||||||||||||| |||||||||||||| |||||    
T  5108515 catttaagacactagaagatcaagaaacaagtcacgagtcatattctatgccctataaatctgaaacttgct 5108586  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 46526765 - 46526685
Alignment:
Q  123 cattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaac 203  Q
    ||||||||||| ||||||| ||||||||| |||||||| |||||||| ||  |||||||||||||| ||| | ||||||||    
T  46526765 cattcaagacaatagaagaacaagaaacaagtctcaagccatattctttgtcctataaatctgaaacttgttcaacaaaac 46526685  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 43912261 - 43912354
Alignment:
Q  124 attcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 218  Q
    ||||| |||| ||||||||||||| ||  |||  ||| || ||| | ||| |||||||||||||| ||||| ||||||||| |||||||||||||    
T  43912261 attcaggacaatagaagatcaagacaccggtcgtaagccacattgtttgccctataaatctgaaacttgctcaacaaaaca-cccacttgttttt 43912354  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 16266793 - 16266883
Alignment:
Q  120 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccac 210  Q
    ||||||||||||||  |||||||||||||||  ||| |||| |||||||| ||| |||||||||||||| ||||| |||||||||||||||    
T  16266793 aaccattcaagacaaaagaagatcaagaaaccagtcccaagccatattctttgccctataaatctgaaacttgctcaacaaaacaccccac 16266883  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 10442213 - 10442115
Alignment:
Q  120 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 218  Q
    ||||||||||||| |||||||||||||||||  ||  |||  |||||||| |||  ||||||||| ||| ||||| |||||||||||||||||||||||    
T  10442213 aaccattcaagacggtagaagatcaagaaaccagttccaacacatattctttgcgttataaatctaaaacttgctcaacaaaacaccccacttgttttt 10442115  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 16906953 - 16906855
Alignment:
Q  120 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 218  Q
    |||||||||||||| |||||||| ||| |||  ||| |||| |||||||| ||| |||||||||||||| || || || |||||||||||||| |||||    
T  16906953 aaccattcaagacaatagaagatgaagcaactagtcccaagccatattctttgccctataaatctgaaacttactcaataaaacaccccacttattttt 16906855  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 22570148 - 22570055
Alignment:
Q  124 attcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 218  Q
    |||| ||||||||||||||||||||||   ||||||| |||||| | ||| |||||||||||||  ||||| ||||||||||| |||||||||||    
T  22570148 attcgagacagtagaagatcaagaaaccaatctcaaggcatatttt-tgccctataaatctgaaccttgctcaacaaaacacctcacttgttttt 22570055  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 2366033 - 2366121
Alignment:
Q  120 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacacccc 208  Q
    |||||||||||||||||||||||||||||||  |||  ||| |||||||| ||| |||||||| |||||||| ||  ||||||||||||    
T  2366033 aaccattcaagacagtagaagatcaagaaaccagtcctaagccatattctttgccctataaatttgaaattttctcgacaaaacacccc 2366121  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 1382353 - 1382258
Alignment:
Q  123 cattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 218  Q
    |||||||||| ||||||  |||| ||||| |||||||||| |||||| ||| |||||||| ||||| ||||| |||||||   |||||||||||||    
T  1382353 cattcaagacggtagaaagtcaaaaaacaagtctcaagtcgtattctttgccctataaatttgaaacttgctaaacaaaaacacccacttgttttt 1382258  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 1388458 - 1388363
Alignment:
Q  123 cattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 218  Q
    |||||||||| ||||||  |||| ||||| |||||||||| |||||| ||| |||||||| ||||| ||||| |||||||   |||||||||||||    
T  1388458 cattcaagacggtagaaagtcaaaaaacaagtctcaagtcgtattctttgccctataaatttgaaacttgctaaacaaaaacacccacttgttttt 1388363  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 23741143 - 23741241
Alignment:
Q  120 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 218  Q
    ||||||||||||  ||||||| |||||||||  || ||||| |||| ||| |||  ||||||||| ||| || || |||||||||||||||||||||||    
T  23741143 aaccattcaagaacgtagaagttcaagaaaccagtttcaagacataatctttgcattataaatctaaaacttactcaacaaaacaccccacttgttttt 23741241  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 42951426 - 42951329
Alignment:
Q  120 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgtttt 217  Q
    ||||||||||||||||| ||||||||||||   ||| |||| |||||| | | | |||| ||||||||| ||||| ||||||||  ||||||||||||    
T  42951426 aaccattcaagacagtaaaagatcaagaaatcagtcgcaagccatattatttaccctatgaatctgaaacttgctcaacaaaactgcccacttgtttt 42951329  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 1106522 - 1106439
Alignment:
Q  135 tagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 218  Q
    ||||||||||||||||   ||||||| | |||||| ||| |||||||||||||| ||||| ||||||||||| |||||| ||||    
T  1106522 tagaagatcaagaaaccaatctcaagccgtattctttgccctataaatctgaaacttgctcaacaaaacacctcacttgctttt 1106439  T

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