View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9689_low_10 (Length: 265)
Name: NF9689_low_10
Description: NF9689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9689_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 4976867 - 4977104
Alignment:
| Q |
16 |
gaaatcatccattacgtacccttctcttgtatcacgttttctcactgtttatgtttgcatgtgcaccgtgtcccctaaaacataaaccatctttaatttt |
115 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4976867 |
gaaatcatccattacgtacccttctcttgtgtcacgttttctcactgtttatgtttgcatgtgcaccgtgtcccctgaaacataaaccatctttaatttt |
4976966 |
T |
|
| Q |
116 |
acacacaattctgactatgtacactctcatgtcactccaaaatagattgatgatgtaatattgaaccgacattattgcttcttcttctccaacacttctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4976967 |
acacacaattctgactatgtacactctcatgtcactccaaaatagattgatgatgtaatattgaaccgacattattgcttcttcttctccaacacttctc |
4977066 |
T |
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| Q |
216 |
aaactccctaagaggacatatattttattcactttctc |
253 |
Q |
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||||| |||||||||||||| ||||||||||||||||| |
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| T |
4977067 |
aaacttcctaagaggacatagattttattcactttctc |
4977104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 4994774 - 4995011
Alignment:
| Q |
16 |
gaaatcatccattacgtacccttctcttgtatcacgttttctcactgtttatgtttgcatgtgcaccgtgtcccctaaaacataaaccatctttaatttt |
115 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4994774 |
gaaatcatccattacgtacccttctcttgtgtcacgttttctcactgtttatgtttgcatgtgcaccgtgtcccctgaaacataaaccatctttaatttt |
4994873 |
T |
|
| Q |
116 |
acacacaattctgactatgtacactctcatgtcactccaaaatagattgatgatgtaatattgaaccgacattattgcttcttcttctccaacacttctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4994874 |
acacacaattctgactatgtacactctcatgtcactccaaaatagattgatgatgtaatattgaaccgacattattgcttcttcttctccaacacttctc |
4994973 |
T |
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| Q |
216 |
aaactccctaagaggacatatattttattcactttctc |
253 |
Q |
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||||| |||||||||||||| ||||||||||||||||| |
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| T |
4994974 |
aaacttcctaagaggacatagattttattcactttctc |
4995011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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