View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9689_low_11 (Length: 247)

Name: NF9689_low_11
Description: NF9689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9689_low_11
NF9689_low_11
[»] chr6 (10 HSPs)
chr6 (1-240)||(2568077-2568316)
chr6 (79-240)||(2635029-2635188)
chr6 (79-240)||(2593055-2593215)
chr6 (1-61)||(2640599-2640659)
chr6 (175-227)||(2562052-2562104)
chr6 (1-59)||(2671597-2671655)
chr6 (1-84)||(2593000-2593086)
chr6 (4-59)||(2451744-2451799)
chr6 (189-232)||(2671518-2671561)
chr6 (1-59)||(2634974-2635032)
[»] scaffold0103 (2 HSPs)
scaffold0103 (79-240)||(4821-4980)
scaffold0103 (1-59)||(4977-5035)


Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2568316 - 2568077
Alignment:
Q  1 tatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacacttactgtaatcttgttttacctcttattgaagtagtctaattcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2568316 tatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacacttactgtaatcttgttttacctcttattgaagtagtctaattcc 2568217  T
Q  101 acctcttatttgagaattgtattaatattgttaacgtcgattttgattaaatgcatatgcacttgtttaccaatggatgtagaacaacttgaagtagaat 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2568216 acctcttatttgagaattgtattaatattgttaatgtcgattttgattaaatgcatatgcacttgtttaccaatggatgtagaacaacttgaagtagaat 2568117  T
Q  201 atttcctaacaacttagtgtaaaactttcttcctcctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2568116 atttcctaacaacttagtgtaaaactttcttcctcctatg 2568077  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 2635029 - 2635188
Alignment:
Q  79 cttattgaagtagtctaattccacctcttatttgagaattgtattaatattgttaacgtcgattttgattaaatgcatatgcacttgtttaccaatggat 178  Q
    ||||||||||||||||  ||| |||| |||||||| | |||||||||||||||||| ||| ||||||||| |||||||||| ||||| ||||| || |||    
T  2635029 cttattgaagtagtcttgttcaacctattatttgaaagttgtattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgat 2635128  T
Q  179 gtagaacaacttgaagtagaatatttcctaacaacttagtgtaaaactttcttcctcctatg 240  Q
    |||||| ||||| ||||||| |||||||||||||||||  |||||| |||||||||||||||    
T  2635129 gtagaa-aactt-aagtagactatttcctaacaacttaaagtaaaaatttcttcctcctatg 2635188  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 2593055 - 2593215
Alignment:
Q  79 cttattgaagtagtctaattccacctcttatttgagaattgtattaatattgttaacgtcgattttgattaaatgcatatgcacttgtttaccaatggat 178  Q
    ||||||||||||||||  ||  ||||||||||| | |||||||||||||||||||| ||| ||||||||| |||||||||| ||||| || || |  |||    
T  2593055 cttattgaagtagtcttgtttaacctcttatttaaaaattgtattaatattgttaatgtcaattttgatttaatgcatatgtacttgattccctagcgat 2593154  T
Q  179 gtagaacaacttgaagtagaatatttcctaacaacttagtgtaaaactttcttcctcctatg 240  Q
    |||||| |||||||||||||| |||||||||||||||  ||||||| |||||| ||||||||    
T  2593155 gtagaa-aacttgaagtagaacatttcctaacaacttgatgtaaaaatttcttactcctatg 2593215  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2640659 - 2640599
Alignment:
Q  1 tatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacacttact 61  Q
    ||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||| |||||||    
T  2640659 tatgattaaaatcttggcttccagcttgaaaataaggggagttagggagatgatacttact 2640599  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 2562104 - 2562052
Alignment:
Q  175 ggatgtagaacaacttgaagtagaatatttcctaacaacttagtgtaaaactt 227  Q
    ||||||||||||||||| ||||||||||||||||| | |||| ||||||||||    
T  2562104 ggatgtagaacaacttgtagtagaatatttcctaatatcttaatgtaaaactt 2562052  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2671655 - 2671597
Alignment:
Q  1 tatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta 59  Q
    |||| |||||||  ||||||| ||||||| ||||| |||||||||||||||||||||||    
T  2671655 tatggttaaaattgtggctcctaccttgaaaataaggggagttagggagatgacactta 2671597  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2593000 - 2593086
Alignment:
Q  1 tatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacacttact---gtaatcttgttttacctcttatt 84  Q
    ||||| ||||| | |||||||||||| || |||||  |||||||||||||||||||||| |   ||| |||||||| ||||||||||    
T  2593000 tatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgtttaacctcttatt 2593086  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 2451744 - 2451799
Alignment:
Q  4 gattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta 59  Q
    ||||||||| |||||||||||||||| ||||| ||||||| |||| || |||||||    
T  2451744 gattaaaatattggctcccaccttgaaaataaagggagtttgggaaatcacactta 2451799  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 2671561 - 2671518
Alignment:
Q  189 ttgaagtagaatatttcctaacaacttagtgtaaaactttcttc 232  Q
    |||||||| ||||||||||||||| ||| |||||||||||||||    
T  2671561 ttgaagtaaaatatttcctaacaatttaatgtaaaactttcttc 2671518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2634974 - 2635032
Alignment:
Q  1 tatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta 59  Q
    ||||| ||||| | |||||||||||| || |||||  ||||||||||||||||||||||    
T  2634974 tatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacactta 2635032  T

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Target: scaffold0103 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 4980 - 4821
Alignment:
Q  79 cttattgaagtagtctaattccacctcttatttgagaattgtattaatattgttaacgtcgattttgattaaatgcatatgcacttgtttaccaatggat 178  Q
    ||||||||||||||||  ||| |||| |||||||| | |||||||||||||||||| ||| ||||||||| |||||||||| ||||| ||||| || |||    
T  4980 cttattgaagtagtcttgttcaacctattatttgaaagttgtattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgat 4881  T
Q  179 gtagaacaacttgaagtagaatatttcctaacaacttagtgtaaaactttcttcctcctatg 240  Q
    |||||| ||||| ||||||| |||||||||||||||||  |||||| |||||||||||||||    
T  4880 gtagaa-aactt-aagtagactatttcctaacaacttaaagtaaaaatttcttcctcctatg 4821  T

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Target: scaffold0103; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5035 - 4977
Alignment:
Q  1 tatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta 59  Q
    ||||| ||||| | |||||||||||| || |||||  ||||||||||||||||||||||    
T  5035 tatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacactta 4977  T

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