View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9689_low_2 (Length: 406)
Name: NF9689_low_2
Description: NF9689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9689_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 45512919 - 45513299
Alignment:
| Q |
19 |
tcaaacaccttgtcttgagtggtattcgtctcaatgacaagcgcaacttgttccaggtactcaatacacttccttctttattaaatctttcactgtctgg |
118 |
Q |
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| T |
45512919 |
tcaaacaccttgacttgagtggtattcgtctcaatgacacgcgcaacttgttccaggtactcaatacacttccttctttattaaatctttcactgtctgg |
45513018 |
T |
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| Q |
119 |
atgtagagttgacaattcactcattcctcgttatgctttccaaaacatgacatctcttatctatcttgatctctcatcaaatgagcttcatggtccgatt |
218 |
Q |
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| T |
45513019 |
atgtagagttgacaattcactcattcctcgttatgctttccaaaacatgacatctcttatctatcttgatctctcatcaaatgagcttcatggtccgatt |
45513118 |
T |
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| Q |
219 |
cctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggttcagtcactttgagaaactta |
318 |
Q |
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| T |
45513119 |
cctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggttcggtcactttgagaaactta |
45513218 |
T |
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| Q |
319 |
cccttcttgacctttcttacaatgggctttatggtcaaatacctcatgctttcacgaacttgtcatccctggttcatctca |
399 |
Q |
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| T |
45513219 |
cccttcttgacctttcttataatgggctttatggtcaaatacctcatgctttcacgaacttgtcatccctggtgcatctca |
45513299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 298
Target Start/End: Original strand, 45513524 - 45513624
Alignment:
| Q |
198 |
aatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggt |
297 |
Q |
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| T |
45513524 |
aatgagcttcatggtccaattccaggggtttttcgaaacatgacttcaattgaataccttagcctttctaaaaatagtttaacttcaattccatcatggt |
45513623 |
T |
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| Q |
298 |
t |
298 |
Q |
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| T |
45513624 |
t |
45513624 |
T |
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