View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9689_low_8 (Length: 344)
Name: NF9689_low_8
Description: NF9689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9689_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 21498950 - 21499267
Alignment:
| Q |
18 |
agctcatattggacctgaaccaacaactgataagtttgttgttgtcatggtatgtgccaaagcatttactcttcattacccatcactactgatatggtct |
117 |
Q |
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| T |
21498950 |
agctcatattggacctgaaccaacaactgataagtttgttgttgtcatggtatgtgccaaagcatttactcttcattacccatcactactgatatggtct |
21499049 |
T |
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| Q |
118 |
tttatagggtnnnnnnnncggcagttttctcacttttaaatatctatattaaatttacttctgtgccatgacatgatgagttcatggttcgattaagaaa |
217 |
Q |
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| T |
21499050 |
tttatagggtaaaaaaa-cggtagttttctcacttttaaatatccatattaaatttgcttctgtgccatgacatgatgagttcatggttcggttaagaaa |
21499148 |
T |
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| Q |
218 |
ggaagatcaaactgaattgttagaacagttcggtaaaattgaaccgaactattattataaaggttcggtgcaccaactttgtgtttctgaactgaaacta |
317 |
Q |
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| T |
21499149 |
ggaagatcgaactgaattgttagaacagtttggtaaaattgaaccgaac---tattataatggttcggtgcaccagttttgtatttccaaactcaaacta |
21499245 |
T |
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| Q |
318 |
ccttcacagaaatccaaactgc |
339 |
Q |
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| T |
21499246 |
ccttcatagaagaccaaactgc |
21499267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 21469027 - 21469124
Alignment:
| Q |
18 |
agctcatattggacctgaaccaacaactgataagtttgttgttgtcatggtatgtgccaaagcatttactcttcattacccatcactactgatatggt |
115 |
Q |
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| T |
21469027 |
agctcatattggacctgaaccaacaactgataggtttgttgttgtcatggtatgtactaaaccatttactctccattactagttactactgatatggt |
21469124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 8789804 - 8789768
Alignment:
| Q |
231 |
gaattgttagaacagttcggtaaaattgaaccgaact |
267 |
Q |
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| T |
8789804 |
gaattgttacaacagttcggtaaaactgaaccgaact |
8789768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 40921476 - 40921530
Alignment:
| Q |
22 |
catattggacctgaaccaacaactgataagtttgttgttgtcatggtatgtgcca |
76 |
Q |
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| T |
40921476 |
catattggacctgagcctacaactgataggtttgttgttgtcatggtatgtgcca |
40921530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 32831397 - 32831439
Alignment:
| Q |
225 |
caaactgaattgttagaacagttcggtaaaattgaaccgaact |
267 |
Q |
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| T |
32831397 |
caaacttaattgttagaacagttcggtaaaatcaaaccgaact |
32831439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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