View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_high_11 (Length: 250)
Name: NF9690_high_11
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 2503193 - 2503437
Alignment:
| Q |
1 |
ttaattctcttattattttatgtggtatggataatcatgtggttaagtggtaaaattttagctgggtaatagtatttgtgttatagatctataagattag |
100 |
Q |
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| T |
2503193 |
ttaattctcttattatgttatgtggtatggataatcatgtggttaagaggtaaaattttagctgggtaatagtatttgtgttatagatctataagattag |
2503292 |
T |
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| Q |
101 |
aatttgggagggtttgtatgacatagttttgattgattagaagatctgattagagatatgaatagattatagttttgatgagatagtaagatactttagc |
200 |
Q |
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| T |
2503293 |
tatttgggagggtttgtatgacatagttttgattgattagaagatctgattagagatatgaatagattataattttaatgagatagtaagatactttagc |
2503392 |
T |
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| Q |
201 |
ataagttgttttaagaattttacttttctgatatcctatgcttct |
245 |
Q |
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| T |
2503393 |
ataagttgttttaagaattttacttttctgatatcttatgattct |
2503437 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 33236504 - 33236440
Alignment:
| Q |
42 |
gttaagtggtaaaattttagctgggtaatagta-tttgtgttatagatctataagattagaattt |
105 |
Q |
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|||||||||| |||||| | |||||| ||| || |||| |||||||||||||||||||||||||| |
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| T |
33236504 |
gttaagtggtgaaatttcatctgggtgatattaatttgggttatagatctataagattagaattt |
33236440 |
T |
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