View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9690_high_13 (Length: 239)
Name: NF9690_high_13
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37749951 - 37750171
Alignment:
| Q |
1 |
atttccattttcatttcttaaacaggaactttgcttatgaccgaagaaagacagaaggctatatgggctatatatggtaggaaattacaatagatcaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37749951 |
atttccattttcatttcttaaacaggaactttgcttatgaccgaagaaagacagaaggctatatgggctatatatggtaggaaattacaatagatcaaga |
37750050 |
T |
|
| Q |
101 |
tagaaacaatgttgcaattagttttgtaagtcaaaatatatcttatttattgaaatctctgtttgcagtttggtgcaggaggacagatgagcttgttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37750051 |
tagaaacaatgttgcaattagttttgtaagtcaaaatatatcttatttattgaaatctttgtttgcagtttggtgcaggaggacagatgagcttgttgat |
37750150 |
T |
|
| Q |
201 |
ggtcctaatgctgactatatg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37750151 |
ggtcctaatgctgactatatg |
37750171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 37755753 - 37755970
Alignment:
| Q |
7 |
attttcatttcttaaacaggaactttgcttatgaccgaagaaagacagaaggctatatgggctatatatggtaggaaattacaatagatcaagatagaaa |
106 |
Q |
| |
|
||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| ||| |
|
|
| T |
37755753 |
attttcattcctttaacaagaactttgcttatgaccgaagaaagacagaaggctatatgggctatatatggtaagaaattacaacagataaagataaaaa |
37755852 |
T |
|
| Q |
107 |
caatgttgcaattagttt---tgtaagtcaaaatatatcttatttattgaaatctctgtttgcagtttggtgcaggaggacagatgagcttgttgatggt |
203 |
Q |
| |
|
|| ||||||||||||||| || ||| |||||||||| ||||||||||||| || | |||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
37755853 |
cagtgttgcaattagttttgatgcaagccaaaatatattttatttattgaaacctttatttgcagtttggtgcaggaggacatatgagtttgttgatggt |
37755952 |
T |
|
| Q |
204 |
cctaatgctgactatatg |
221 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
37755953 |
cctaatgctgactgtatg |
37755970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University