View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_high_14 (Length: 234)
Name: NF9690_high_14
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_high_14 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 183341 - 183287
Alignment:
| Q |
180 |
ttgaattgaatggtaattgaaaaattcacaaacctctttcttgccgtatttatct |
234 |
Q |
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| T |
183341 |
ttgaattgaatggtaattgaaaaattcacaaacctctttcttgccgtatttatct |
183287 |
T |
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Target: scaffold0018; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 183504 - 183448
Alignment:
| Q |
69 |
gcttcatagacggtgccagattaagagtgtatacaaaaactagtctcttttcacaag |
125 |
Q |
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| T |
183504 |
gcttcatcgacggtgccagattaagagtgtatacaaaaactagtctcttttcacaag |
183448 |
T |
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