View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9690_high_2 (Length: 505)

Name: NF9690_high_2
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9690_high_2
NF9690_high_2
[»] chr1 (3 HSPs)
chr1 (1-499)||(50965056-50965554)
chr1 (1-97)||(50980507-50980602)
chr1 (322-495)||(50981562-50981737)
[»] chr4 (3 HSPs)
chr4 (380-499)||(13636567-13636685)
chr4 (1-84)||(13641257-13641339)
chr4 (321-376)||(13637831-13637889)


Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 50965056 - 50965554
Alignment:
Q  1 gtgttctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgctaatgtactctgcctgtggttctgacatgttggtttctatgcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50965056 gtgttctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgctaatgtactctgcctgtggttctgacatgttggtttctatgcttt 50965155  T
Q  101 tggtcacttaacaaagatgccattacataatcatatctgtgccagctatttggttacttatcatgtcatgttggtttctatgctaacaatttggagttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50965156 tggtcacttaacaaagatgccattacataatcatatctgtgccagctatttggttacttatcatgtcatgttggtttctatgctaacaatttggagttgt 50965255  T
Q  201 actccacatgcatcaactattcatcacacgacttcttctgcttgttgggcatgccattacataacaatgttgataactccagtaacacactgtgttcacc 300  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50965256 actccacatgcatcaactattcatcacactacttcttctgcttgttgggcatgccattacataacaatgttgataactccagtaacacactgtgttcacc 50965355  T
Q  301 ctggttcatctttagtcgatagtcacacacgatacgatcacggctttcccaacaagatcacctgttatatgaacctatcggggagcattataaccagaat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50965356 ctggttcatctttagtcgatagtcacacacgatacgatcacggctttcccaacaagatcacctgttatatgaacctatcggggagccttataaccagaat 50965455  T
Q  401 ggaacaataaacacatcgctatcaagagacatattaacgcccttttcgacttttctaacaaaagtactagttatccctccattgcacacaaacaccaaa 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50965456 ggaacaataaacacatcgctatcaagagacatattaacgcccttttcgacttttctaacaaaagtactagttatccctccattgcacacaaacaccaaa 50965554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 50980507 - 50980602
Alignment:
Q  1 gtgttctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgctaatgtactctgcctgtggttctgacatgttggtttctatgc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||| ||||    
T  50980507 gtgttctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgctga-gtactctggctgtggttctgtcatgttggtttccatgc 50980602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 322 - 495
Target Start/End: Original strand, 50981562 - 50981737
Alignment:
Q  322 gtcacacacgatacgatcacggctttcccaacaagatcacc---tgttatatgaacctatcggggagcattataaccagaatggaacaataaacacatcg 418  Q
    ||||| ||||||||||||||  |||||||||||||||||||   ||| |||||||||| | |||||||||||||||||||| ||||||  ||| |||||     
T  50981562 gtcacccacgatacgatcacttctttcccaacaagatcaccttgtgtaatatgaacctgttggggagcattataaccagaa-ggaacagcaaaaacatca 50981660  T
Q  419 ctatcaagagacatattaacgcccttttcgacttttctaacaaaagtactagttatccctccattgcacacaaacac 495  Q
    |||||||| |||||||||||||| || |  || || |||||||||| ||| ||| | |||||||| |||||| ||||    
T  50981661 ctatcaagtgacatattaacgcctttctgaacattcctaacaaaagcactggttgtgcctccattacacacagacac 50981737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 380 - 499
Target Start/End: Complemental strand, 13636685 - 13636567
Alignment:
Q  380 ggggagcattataaccagaatggaacaataaacacatcgctatcaagagacatattaacgcccttttcgacttttctaacaaaagtactagttatccctc 479  Q
    |||||||||||||||||||| ||||||  ||| ||||| |||||||| | ||||| || |  ||| || ||||| |||||||||||||||||| | ||||    
T  13636685 ggggagcattataaccagaa-ggaacatcaaaaacatcactatcaagtggcatatcaatggtcttctcaactttcctaacaaaagtactagttctgcctc 13636587  T
Q  480 cattgcacacaaacaccaaa 499  Q
    |||| |||||||||||||||    
T  13636586 cattacacacaaacaccaaa 13636567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13641339 - 13641257
Alignment:
Q  1 gtgttctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgctaatgtactctgcctgtggttctgacatg 84  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| | ||||||||  |||||||||| ||||    
T  13641339 gtgttctgttctttatgtcaaaaatggcatgtccaaagctggcctctctgtatgctga-gtactctggttgtggttctgtcatg 13641257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 13637889 - 13637831
Alignment:
Q  321 agtcacacacgatacgatcacggctttcccaacaagatcacc---tgttatatgaacct 376  Q
    |||||| |||||||||||||| |||||||| ||| |||||||   ||||||||||||||    
T  13637889 agtcacccacgatacgatcactgctttccccacatgatcaccttgtgttatatgaacct 13637831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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