View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_high_3 (Length: 460)
Name: NF9690_high_3
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 26553018 - 26552585
Alignment:
| Q |
18 |
agacggataaaattccaactggcatctaccactcgcataaattcaacccacctcgacactaaatttaacttgtnnnnnnngaaaagagtatgctaaacta |
117 |
Q |
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| T |
26553018 |
agacggataaaattccaactggcatctaccactcgcataaattcaacccacctcgacactaaatttaacttgtaaaaaaagaaaagagtatgctaaacta |
26552919 |
T |
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| Q |
118 |
acagtctacgttgcgcaccacggctatgcaggtaatgtattgcaaagaccttgacaaaagcccttatttgaaagtaatcgagttagaggcac-------- |
209 |
Q |
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| T |
26552918 |
acagtccacgttgcacaccacggctttgcaggtaatgtattgcaaagaccttgacaaaagcccttatttgaaagtaatcgagttagagccacattcatca |
26552819 |
T |
|
| Q |
210 |
-tgatagagcatggctttaaaaaaggtctcaagcattttaccgatatacatattttcagaatggagccctggataacaccttatgttaaccggatatata |
308 |
Q |
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| T |
26552818 |
ctgatagagcatggctttaaaaaaggtctcaagcattttaccgatatacatattctcagaatggagccctggataacaccttatgttaaccggatatata |
26552719 |
T |
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| Q |
309 |
ggtaatatcgtaatcataggtacacgtaatcctaatccaacaacttgtatttcacccataaagtgcagtctaaagaataaaaggatggctcgttgtccca |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26552718 |
ggtaatatcgtaatcataggtacacgtaatcctaatccaacaacttgtatttcacccataaagtgcagtctaaagaataaaaggatggctcgttgtccct |
26552619 |
T |
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| Q |
409 |
gatcaaatagttgcctagaaatcaccctccttat |
442 |
Q |
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||||||| | |||||||||||||||||||||||| |
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| T |
26552618 |
gatcaaacatttgcctagaaatcaccctccttat |
26552585 |
T |
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