View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_high_4 (Length: 399)
Name: NF9690_high_4
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 18101266 - 18101450
Alignment:
| Q |
18 |
tgaatattgtgttgagtttggactttggagtagtgggtgagatgctgggaaatttgtttggtgttagtacataaattggattgggtaataatagcatgcg |
117 |
Q |
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| T |
18101266 |
tgaatattgtgttgagtttggactttggagtagtgggtgagatgctgggaaatttgtttggtgttagtacataaattggattgggtaataatagcatacg |
18101365 |
T |
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| Q |
118 |
gatgaaatgagagttgatatggttcacaaggttttgaaagcttcgaagaaaagtgtgtcagagaatttgacagtttgtggtgtcc |
202 |
Q |
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| T |
18101366 |
gatgaaatgagagttgatatggttcacaaggttttgaaagctttgaagaaaagtgtgtcagagaatttgacagtttgtggtgtcc |
18101450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 236 - 386
Target Start/End: Original strand, 18101483 - 18101633
Alignment:
| Q |
236 |
cttgtgtgtcattgttatttcttcatcatattttgtggtattttactattttaccttgtttgatttgattgcaagtggcattaccttgttttaaatttta |
335 |
Q |
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| T |
18101483 |
cttgtgtgtcattgttatttcttcatcatattttgtggtattttactattttaccttgtttgatttgattgcaagtggcattaccttgtttgaaatttta |
18101582 |
T |
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| Q |
336 |
taccaatcagaactttgatacatctatgaatcaatgtctgtcttcaagtct |
386 |
Q |
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| T |
18101583 |
taccaatcagaactttgatacatctatgaatcaatgtctgtcttcaagtct |
18101633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 37858874 - 37859058
Alignment:
| Q |
18 |
tgaatattgtgttgagtttggactttggagtagtgggtgagatgctgggaaatttgtttggtgttagtacataaattggattgggtaataatagcatgcg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37858874 |
tgaatattgtgttgagtttggactttggagtagtgggtgagatgctgggaaatttgtttggtgttagtacataaattggattgggtaataatagcatacg |
37858973 |
T |
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| Q |
118 |
gatgaaatgagagttgatatggttcacaaggttttgaaagcttcgaagaaaagtgtgtcagagaatttgacagtttgtggtgtcc |
202 |
Q |
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| T |
37858974 |
gatgaaatgagagttgatatggttcacaaggttttgaaagctttgaagaaaagtgtgtcagagaatttgacagtttgtggtgtcc |
37859058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 236 - 386
Target Start/End: Original strand, 37859091 - 37859241
Alignment:
| Q |
236 |
cttgtgtgtcattgttatttcttcatcatattttgtggtattttactattttaccttgtttgatttgattgcaagtggcattaccttgttttaaatttta |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37859091 |
cttgtgtgtcattgttatttcttcatcatattttgtggtattttactattttaccttgtttgatttgattgcaagtggcattaccttgtttgaaatttta |
37859190 |
T |
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| Q |
336 |
taccaatcagaactttgatacatctatgaatcaatgtctgtcttcaagtct |
386 |
Q |
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| T |
37859191 |
taccaatcagaactttgatacatctatgaatcaatgtctgtcttcaagtct |
37859241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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