View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_high_6 (Length: 336)
Name: NF9690_high_6
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_high_6 |
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| [»] scaffold1415 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 5081686 - 5082007
Alignment:
| Q |
1 |
atttggaatttttccaacaaacttgtttccgtacatgtgtagttgctgtaggttaggaaggccaaatcccagatttgatggaagcatgcctgagaaagaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5081686 |
atttggaatttttccaacaaacttgtttccgtacatgtgtagttgctgtaggttaggaaggccaaatcccagatttgatggaagcatgcctgagaaagaa |
5081785 |
T |
|
| Q |
101 |
ttttgttcaagatgcaaatattccaatgttgaaatgttgaagattttcaaaggaataggtccgctcaagctgttatttcctatttgtagaagctgaagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5081786 |
ttttgttcaagatgcaaatattccaatgttgaaatgttgaagattttcaaaggaataggtccgctcaagctgttatttcccatttgtagaagctgaagtt |
5081885 |
T |
|
| Q |
201 |
gattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaataaacaaat---atgtataagatgatgcatagcagt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5081886 |
gattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaataaacaaattacatgtataagatgatgcatagcagt |
5081985 |
T |
|
| Q |
298 |
accgatgcatgaaatgcttaag |
319 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
5081986 |
accgatgcatgaaatgcttaag |
5082007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 5100300 - 5100037
Alignment:
| Q |
1 |
atttggaatttttccaacaaacttgtttccgtacatgtgtagttgctgtaggttaggaaggccaaatcccagatttgatggaagcatgcctgagaaagaa |
100 |
Q |
| |
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|||||||||| |||||||||| ||||| | | |||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |
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| T |
5100300 |
atttggaattcttccaacaaatctgtttgctaaaatgtctagttgttgtaggttaggaagtccaaatcccaaatttgatggaagcatgcctgagagagaa |
5100201 |
T |
|
| Q |
101 |
ttttgttcaagatgcaaatattccaatgttgaaatgttgaagattttcaaaggaataggtccgctcaagctgttatttcctatttgtagaagctgaagtt |
200 |
Q |
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||||| ||||||| |||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||| ||||||| ||||||| |
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| T |
5100200 |
ttttgatcaagatacaaaatttccaatgttgaaatgttgaagacttttgaaggaataggtccactcaagctgttatttcccattagtagaagttgaagtt |
5100101 |
T |
|
| Q |
201 |
gattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaa |
264 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
5100100 |
gactgagatggccaatctccattggtatcgaacctaaaatcaaatatcataaagaaacaacaaa |
5100037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 5117859 - 5117588
Alignment:
| Q |
1 |
atttggaatttttccaacaaacttgtttccgtacatgtgtagttgctgtaggttaggaaggccaaatcccagatttgatggaagcatgcctgagaaagaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| || || |||||||||||||| |||||||| | |||||||||||||||||||||||||||| |
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| T |
5117859 |
atttggaatttttccaacaaatttgtttccatacatttggaggaattgtaggttaggaagtccaaatccaaaatttgatggaagcatgcctgagaaagaa |
5117760 |
T |
|
| Q |
101 |
ttttgttcaagatgcaaatattccaatgttgaaatgttgaagattttcaaaggaataggtccgctcaagctgttatttcctatttgtagaagctgaagtt |
200 |
Q |
| |
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||| |||||||| ||||||||| |||||||||||||||||||| || |||||||||| || ||||||||||||||| || |||||||||||||| |
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| T |
5117759 |
tttagttcaagacgcaaatatttcaatgttgaaatgttgaagacttgtgaaggaataggcccactcaagctgttatttttcataaatagaagctgaagtt |
5117660 |
T |
|
| Q |
201 |
gattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaataaacaaa |
272 |
Q |
| |
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|||||||| |||||||||| ||||||| |||||||| |||||||||||| |||||| |||||||||||||| |
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| T |
5117659 |
gattgagatggccaatctcctttggtattgaacctaacatcacatatcatagagaaaaaacaaataaacaaa |
5117588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 14413991 - 14414262
Alignment:
| Q |
1 |
atttggaatttttccaacaaacttgtttccgtacatgtgtagttgctgtaggttaggaaggccaaatcccagatttgatggaagcatgcctgagaaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14413991 |
atttggaatttttccaacaaacttgtttccatacatgcgtagtactcgtaggttaggaaggccaaatccgagatttgatggaagcatgcctgagaaagaa |
14414090 |
T |
|
| Q |
101 |
ttttgttcaagatgcaaatattccaatgttgaaatgttgaagattttcaaaggaataggtccgctcaagctgttatttcctatttgtagaagctgaagtt |
200 |
Q |
| |
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|||||| ||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||| | |||||||||| |||||||| |
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| T |
14414091 |
ttttgtccaagaaacaaattttccaatgttgaaatgttgaagagttttgaaggaataggtccactcaagttgttattccacatttgtagaatctgaagtt |
14414190 |
T |
|
| Q |
201 |
gattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaataaacaaa |
272 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||| |
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| T |
14414191 |
gattgagatggccaatctccattggtaacgaacctaacatcacatatcataaagaaacaacacataaacaaa |
14414262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 16884569 - 16884299
Alignment:
| Q |
1 |
atttggaatttttccaacaaacttgtttccgtacatgtgtagttgctgtaggttaggaaggccaaatcccagatttgatggaagcatgcctgagaaagaa |
100 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||||||| || | ||||| ||||||||||||| ||||| ||| | ||||||||||||||||| |||| |
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| T |
16884569 |
atttggaattttcccaacaaatttgtttttgtacatgtgcagctcttgtagattaggaaggccaagtcccatattgggtggaagcatgcctgagagagaa |
16884470 |
T |
|
| Q |
101 |
ttttgttcaagatgcaaatattccaatgttgaaatgttgaagattttcaaaggaataggtccgctcaagctgttatttcctatttgtagaagctgaagtt |
200 |
Q |
| |
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||| | ||||||||||||| ||||||||||||||||||||||| ||| |||||| | |||| ||||||||||||||||| |||||||||| ||||| || |
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| T |
16884469 |
tttagctcaagatgcaaatgttccaatgttgaaatgttgaagagtttagaaggaacatgtccactcaagctgttatttcccatttgtagaacctgaattt |
16884370 |
T |
|
| Q |
201 |
gattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaataaacaaa |
272 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||| || ||| |||| |||||||||||||||||||||| |
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|
| T |
16884369 |
gattgagattgccaatctccataggtatcaaacctataagaacacatca-tgagaaacaacaaataaacaaa |
16884299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1415 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1415
Description:
Target: scaffold1415; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 960 - 1054
Alignment:
| Q |
1 |
atttggaatttttccaacaaacttgtttccgtacatgtgtagttgctgtaggttaggaaggccaaatcccagatttgatggaagcatgcctgaga |
95 |
Q |
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||||||||| ||||||||||| |||||| |||| |||||| | || ||||||||||||| | ||||| |||||||||||| ||||||||| |
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| T |
960 |
atttggaatatttccaacaaaattgttttgatacaagtgtagattatgcaggttaggaaggctatatcccgtatttgatggaagtgtgcctgaga |
1054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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