View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_1 (Length: 574)
Name: NF9690_low_1
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 13 - 557
Target Start/End: Complemental strand, 43585887 - 43585343
Alignment:
| Q |
13 |
gaggagcacagatcacaaaagctacaaaacaacctcgatcaaatcaaaaatcactagccaaaggtacatggtctgagggcatgaagacatagctatagat |
112 |
Q |
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| T |
43585887 |
gaggaacacaaatcacaaaagctacaaaacaacctcaatcaaatcaaaaatcactagccaaaggtacatggtctgagggcatgaagacatagctatagat |
43585788 |
T |
|
| Q |
113 |
gacaccagccaaaccaccaccaataagaggtccaacccaatagatccagttgttatggtagtcaccacttacaaccgcaggcccgaatgaacgtgccgga |
212 |
Q |
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| T |
43585787 |
gacaccagccaaaccaccaccaataagaggtccaacccaatagatccagttgttatggtagtcaccacttaaaactgcaggcccgaatgaacgtgccgga |
43585688 |
T |
|
| Q |
213 |
ttcattgacccaccagagaatggtcctgcagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaattgtccctaatgaccctttcttag |
312 |
Q |
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| T |
43585687 |
ttcattgacccaccagagaatggtcctgcagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaattgtccctaatgaccctttcttag |
43585588 |
T |
|
| Q |
313 |
gatcagctgctgtggcatacactgtgtacaccaatccaaatgttatgataatctctgtcacaactccttcaccagctccaactccagaagcaacactgtg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585587 |
gatcagctgctgtggcatacactgtgtacaccaatccaaatgttatgataatctctgtcacaactccttcaccagctccaactccagaagcaacactgtg |
43585488 |
T |
|
| Q |
413 |
gataggaattgtctgaaaataaatacatagcatacaatcagttatggaactattgatgttttaaaattcaaaaaggtatgaaacttgtgatgcaagaatg |
512 |
Q |
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| T |
43585487 |
gataggaattgtctgaaaacaaatacatagcacacaatcagttatggaactattgatgttttaaaattcaaaaaggtatgaaacttgtgatgcaagaatg |
43585388 |
T |
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| Q |
513 |
ataaacataccaagcctcctgtggcatacttgaggagaaagcatg |
557 |
Q |
| |
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| T |
43585387 |
ataaacataccaagcctcctgtggcatacttgaggagaaagcatg |
43585343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 7e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 91 - 380
Target Start/End: Original strand, 4188994 - 4189283
Alignment:
| Q |
91 |
gcatgaagacatagctatagatgacaccagccaaaccaccaccaataagaggtccaacccaatagatccagttgttatggtagtcaccacttacaaccgc |
190 |
Q |
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| T |
4188994 |
gcatgaacacattgccatagataagcccagccaaaccaccaccaataagaggcccagcccaatagatccagttgtcatggaaatttccactaacaactgc |
4189093 |
T |
|
| Q |
191 |
aggcccgaatgaacgtgccggattcattgacccaccagagaatggtcctgcagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaatt |
290 |
Q |
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| T |
4189094 |
aggcccaaaagatcttgccgggttcattgacccgccagagaatgggcctgcagccaatatgttggcaccaacaatgaaaccaatggcaatgggtgcaatt |
4189193 |
T |
|
| Q |
291 |
gtccctaatgaccctttcttaggatcagctgctgtggcatacactgtgtacaccaatccaaatgttatgataatctctgtcacaactcct |
380 |
Q |
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| T |
4189194 |
gtgcctattgaccctttctttggatcagctgctgtggcataaactgtgtataccaaaccaaatgttatgattatttcagtaacaactcct |
4189283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 141 - 367
Target Start/End: Complemental strand, 3930207 - 3929981
Alignment:
| Q |
141 |
ggtccaacccaatagatccagttgttatggtagtcaccacttacaaccgcaggcccgaatgaacgtgccggattcattgacccaccagagaatggtcctg |
240 |
Q |
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||||||||||||||||||||||| | | ||| ||||| || || || || |||||||| || ||||| |||||||| |||||| |||||| || | |
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| T |
3930207 |
ggtccaacccaatagatccagttatcagcaaagtttccactaaccacagctgggccgaatgagcgagccgggttcattgaaccaccactgaatggaccgg |
3930108 |
T |
|
| Q |
241 |
cagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaattgtccctaatgaccctttcttaggatcagctgctgtggcatacactgtgta |
340 |
Q |
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| |||||||| |||||||| |||| || ||||||||||| ||||||||||| || | ||| || || || || ||||||||||||||||| || ||||| |
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| T |
3930107 |
cggctaagatgttggcaccgacaacgaacccaatagcaatgggtgcaattgttccaattgagccctttttggggtcagctgctgtggcataaacagtgta |
3930008 |
T |
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| Q |
341 |
caccaatccaaatgttatgataatctc |
367 |
Q |
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| T |
3930007 |
aaccaatccaaatgttatgataatctc |
3929981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 241 - 355
Target Start/End: Complemental strand, 7656797 - 7656683
Alignment:
| Q |
241 |
cagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaattgtccctaatgaccctttcttaggatcagctgctgtggcatacactgtgta |
340 |
Q |
| |
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||||||||||||| ||||||||||| | |||||| |||||||| ||||| | |||| |||||| || ||||| ||||||| ||||| |||||||| |
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| T |
7656797 |
cagctaagatatttgcaccaacaataacaccaattgcaattggagcaataattcctatattccctttttttggatctactgctgttgcataaactgtgta |
7656698 |
T |
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| Q |
341 |
caccaatccaaatgt |
355 |
Q |
| |
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|||||||||||||| |
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| T |
7656697 |
taccaatccaaatgt |
7656683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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