View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9690_low_12 (Length: 303)

Name: NF9690_low_12
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9690_low_12
NF9690_low_12
[»] chr5 (16 HSPs)
chr5 (23-196)||(7737041-7737214)
chr5 (199-303)||(12807019-12807125)
chr5 (199-303)||(25773654-25773760)
chr5 (199-303)||(30720658-30720764)
chr5 (199-303)||(10285223-10285329)
chr5 (201-303)||(40886776-40886880)
chr5 (201-302)||(36561266-36561369)
chr5 (199-303)||(37900790-37900896)
chr5 (205-302)||(7277589-7277688)
chr5 (199-303)||(16983263-16983371)
chr5 (232-303)||(25683394-25683467)
chr5 (244-303)||(23098400-23098461)
chr5 (242-292)||(30403141-30403191)
chr5 (199-243)||(15305216-15305260)
chr5 (199-303)||(734504-734609)
chr5 (253-300)||(16054173-16054220)
[»] chr8 (25 HSPs)
chr8 (199-303)||(43275565-43275669)
chr8 (201-303)||(30999689-30999791)
chr8 (198-303)||(2540097-2540204)
chr8 (199-303)||(40918897-40919001)
chr8 (199-303)||(3585456-3585562)
chr8 (199-303)||(11174389-11174495)
chr8 (203-303)||(11646491-11646593)
chr8 (199-303)||(40058469-40058575)
chr8 (199-303)||(37345576-37345682)
chr8 (201-303)||(7146920-7147024)
chr8 (199-303)||(36068085-36068191)
chr8 (199-303)||(27035002-27035107)
chr8 (199-303)||(20546455-20546559)
chr8 (198-292)||(28562425-28562519)
chr8 (198-247)||(10646596-10646645)
chr8 (199-247)||(8697898-8697946)
chr8 (199-247)||(41307961-41308009)
chr8 (199-247)||(45278701-45278749)
chr8 (242-301)||(28326825-28326883)
chr8 (199-247)||(40486453-40486501)
chr8 (252-298)||(26629182-26629228)
chr8 (198-303)||(28567923-28568031)
chr8 (198-303)||(28575516-28575624)
chr8 (252-292)||(13881134-13881174)
chr8 (244-292)||(30906869-30906917)
[»] chr3 (27 HSPs)
chr3 (199-303)||(36881287-36881391)
chr3 (199-303)||(198860-198966)
chr3 (199-303)||(13364848-13364954)
chr3 (199-303)||(19241834-19241940)
chr3 (199-303)||(23088097-23088203)
chr3 (199-303)||(29375143-29375249)
chr3 (199-303)||(46694276-46694382)
chr3 (201-303)||(3383083-3383187)
chr3 (203-301)||(43750146-43750246)
chr3 (201-289)||(32835138-32835226)
chr3 (188-302)||(13702762-13702879)
chr3 (199-272)||(27707363-27707436)
chr3 (199-247)||(44277455-44277503)
chr3 (211-279)||(48820444-48820512)
chr3 (199-296)||(37293442-37293539)
chr3 (199-247)||(12094587-12094635)
chr3 (191-263)||(48963152-48963223)
chr3 (199-247)||(19911514-19911562)
chr3 (244-301)||(44522491-44522548)
chr3 (203-247)||(4235760-4235803)
chr3 (199-247)||(38805250-38805298)
chr3 (201-292)||(53559789-53559880)
chr3 (245-291)||(1455328-1455374)
chr3 (203-247)||(4226716-4226759)
chr3 (246-303)||(19897093-19897152)
chr3 (199-235)||(19912174-19912210)
chr3 (199-235)||(38806341-38806377)
[»] chr6 (18 HSPs)
chr6 (199-303)||(7761306-7761410)
chr6 (199-303)||(1605584-1605690)
chr6 (199-303)||(29260197-29260303)
chr6 (201-303)||(30734649-30734753)
chr6 (200-303)||(13757214-13757319)
chr6 (199-303)||(8626487-8626593)
chr6 (200-303)||(30734776-30734879)
chr6 (199-289)||(15064876-15064966)
chr6 (209-303)||(31559902-31559998)
chr6 (203-303)||(17942452-17942556)
chr6 (209-303)||(8235639-8235735)
chr6 (199-303)||(4129440-4129538)
chr6 (199-247)||(19996715-19996763)
chr6 (245-303)||(21277600-21277659)
chr6 (252-303)||(33845451-33845502)
chr6 (243-303)||(14287038-14287099)
chr6 (245-277)||(11370679-11370711)
chr6 (199-235)||(19996327-19996363)
[»] chr7 (15 HSPs)
chr7 (199-303)||(47110456-47110560)
chr7 (199-303)||(10981513-10981619)
chr7 (199-303)||(27813816-27813922)
chr7 (199-303)||(36453290-36453396)
chr7 (201-303)||(25614519-25614621)
chr7 (201-303)||(40348967-40349071)
chr7 (199-247)||(25060133-25060181)
chr7 (252-303)||(16360442-16360493)
chr7 (244-303)||(16662146-16662205)
chr7 (244-303)||(17636506-17636565)
chr7 (242-302)||(7743564-7743625)
chr7 (199-247)||(2911548-2911596)
chr7 (187-235)||(2910851-2910900)
chr7 (242-303)||(3091565-3091628)
chr7 (244-279)||(37983206-37983241)
[»] scaffold1431 (1 HSPs)
scaffold1431 (192-303)||(65-179)
[»] chr4 (19 HSPs)
chr4 (199-303)||(21310430-21310536)
chr4 (199-303)||(25704656-25704762)
chr4 (201-303)||(24706413-24706517)
chr4 (199-303)||(14261049-14261155)
chr4 (201-303)||(22321433-22321537)
chr4 (199-303)||(12071566-12071672)
chr4 (199-303)||(40122651-40122757)
chr4 (199-303)||(34324748-34324855)
chr4 (199-302)||(21661702-21661807)
chr4 (199-302)||(21670466-21670571)
chr4 (201-303)||(44568844-44568948)
chr4 (201-303)||(50767871-50767975)
chr4 (200-303)||(20249179-20249283)
chr4 (199-302)||(31892243-31892344)
chr4 (204-303)||(1988046-1988146)
chr4 (242-302)||(20714514-20714577)
chr4 (242-279)||(48652268-48652305)
chr4 (209-247)||(19361662-19361700)
chr4 (200-303)||(26676732-26676837)
[»] chr2 (13 HSPs)
chr2 (199-303)||(3518913-3519019)
chr2 (199-303)||(1102508-1102614)
chr2 (199-303)||(23366794-23366900)
chr2 (199-303)||(39938175-39938281)
chr2 (199-303)||(12969905-12970011)
chr2 (199-303)||(37673903-37674009)
chr2 (222-303)||(1646317-1646398)
chr2 (199-247)||(34224378-34224426)
chr2 (242-292)||(35179114-35179164)
chr2 (204-279)||(1002922-1002997)
chr2 (245-292)||(32840354-32840401)
chr2 (242-303)||(19976380-19976442)
chr2 (242-278)||(18078104-18078140)
[»] chr1 (33 HSPs)
chr1 (199-303)||(284338-284444)
chr1 (199-303)||(23045445-23045551)
chr1 (201-303)||(47038018-47038120)
chr1 (187-300)||(321618-321734)
chr1 (199-303)||(24772071-24772177)
chr1 (199-303)||(27211130-27211236)
chr1 (199-303)||(40783823-40783929)
chr1 (201-303)||(46771644-46771748)
chr1 (214-303)||(33082765-33082856)
chr1 (192-303)||(23526237-23526351)
chr1 (209-301)||(52037290-52037382)
chr1 (245-303)||(1837995-1838053)
chr1 (244-300)||(1749357-1749415)
chr1 (242-300)||(52478016-52478074)
chr1 (199-247)||(3943065-3943113)
chr1 (199-247)||(9588675-9588723)
chr1 (199-247)||(41959083-41959131)
chr1 (201-247)||(13984991-13985037)
chr1 (199-292)||(51064935-51065028)
chr1 (199-235)||(9589631-9589667)
chr1 (208-260)||(40564241-40564293)
chr1 (199-235)||(44227853-44227889)
chr1 (199-247)||(44228228-44228276)
chr1 (242-277)||(14351954-14351989)
chr1 (242-292)||(3657125-3657175)
chr1 (253-300)||(18396754-18396803)
chr1 (242-300)||(34458892-34458950)
chr1 (242-292)||(40261451-40261501)
chr1 (202-247)||(1168369-1168414)
chr1 (253-303)||(7765072-7765124)
chr1 (254-302)||(40562748-40562797)
chr1 (199-235)||(3943763-3943799)
chr1 (199-235)||(41959809-41959845)
[»] scaffold0054 (1 HSPs)
scaffold0054 (199-303)||(45459-45565)
[»] scaffold0062 (1 HSPs)
scaffold0062 (209-303)||(431-525)
[»] scaffold1770 (1 HSPs)
scaffold1770 (199-303)||(175-273)
[»] scaffold0257 (1 HSPs)
scaffold0257 (199-247)||(23472-23520)
[»] scaffold0056 (1 HSPs)
scaffold0056 (244-292)||(70874-70922)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 7737214 - 7737041
Alignment:
Q  23 taatgttttaagcaatgaagtatgtgcatgccacttgctatagtagtaaatagtgtgctacgaattatttgtatctagctaccaactaacacatttgagt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7737214 taatgttttaagcaatgaagtatgtgcatgccacttgctatagtagtaaatagtgtgctacgaattatttgtatctagctaccaactaacacatttgagt 7737115  T
Q  123 aaatggaatgcatgaatgcgacgtcatgcccgtatggatgaggcattggtaagtgtgttgatcataaaaatata 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7737114 aaatggaatgcatgaatgcgacgtcatgcccgtatggatgaggcattggtaagtgtgttgatcataaaaatata 7737041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 12807125 - 12807019
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  12807125 cctccgtttcaaaatacatgtccattttggagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 12807026  T
Q  297 aataccc 303  Q
    |||||||    
T  12807025 aataccc 12807019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 25773654 - 25773760
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  25773654 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 25773753  T
Q  297 aataccc 303  Q
    |||||||    
T  25773754 aataccc 25773760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 30720764 - 30720658
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||    
T  30720764 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttat 30720665  T
Q  297 aataccc 303  Q
    |||||||    
T  30720664 aataccc 30720658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 10285329 - 10285223
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  10285329 cctccgtttcaaaatagatgtctattttggagaaattgcattaaccaagaaactaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 10285230  T
Q  297 aataccc 303  Q
    |||||||    
T  10285229 aataccc 10285223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 40886880 - 40886776
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctataa 298  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||  ||||||||||    
T  40886880 tccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcgaataaattttgttatttttgatgaaaatatgtgtgtattttctataa 40886781  T
Q  299 taccc 303  Q
    |||||    
T  40886780 taccc 40886776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 201 - 302
Target Start/End: Complemental strand, 36561369 - 36561266
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctataa 298  Q
    |||||||||||||||||||| ||||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  36561369 tccgtttcaaaatacatgtccattttagaaaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 36561270  T
Q  299 tacc 302  Q
    ||||    
T  36561269 tacc 36561266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 37900896 - 37900790
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 296  Q
    ||||||||||||||||||  || ||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||  |||||||||||||||||    
T  37900896 cctccgtttcaaaatacacatccattttggagaaattgcagtaaccaagaaactaaataaattttgatatttttgatgaaattatatgtgtgttttctat 37900797  T
Q  297 aataccc 303  Q
    |||||||    
T  37900796 aataccc 37900790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 7277688 - 7277589
Alignment:
Q  205 tttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacc 302  Q
    |||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| |||  || ||||||||||||||||||||    
T  7277688 tttcaaaatacatgtctattttggagaaattggagtaaccaataaaccaaataaattttgttatttttgatcaaattatgtgtgtgttttctataatacc 7277589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 16983263 - 16983371
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataa--attttgttatttttgatgaaa--atatgtgtgttttct 294  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||   |||| || ||||||||||||  |||||||| ||||||    
T  16983263 cctctgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttttttttttgatgaaatgatatgtgttttttct 16983362  T
Q  295 ataataccc 303  Q
    | |||||||    
T  16983363 acaataccc 16983371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 25683467 - 25683394
Alignment:
Q  232 aattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataataccc 303  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||  || |||||||||||||||||||||    
T  25683467 aattgcaataaccaagaaaccaaataaattttgttatttttgataaaattatgtgtgtgttttctataataccc 25683394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 23098461 - 23098400
Alignment:
Q  244 caagaaaccaaataaattttgttatttttgatgaaaatatgtg--tgttttctataataccc 303  Q
    |||||||| ||||||||||||||||||||||||||| ||||||  ||||| |||||||||||    
T  23098461 caagaaactaaataaattttgttatttttgatgaaattatgtgcatgtttcctataataccc 23098400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 30403191 - 30403141
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt 292  Q
    |||||||||||||||||||||||||||||||||||||| | ||||| ||||    
T  30403191 accaagaaaccaaataaattttgttatttttgatgaaattctgtgtttttt 30403141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 15305260 - 15305216
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaac 243  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  15305260 cctccgtttcaaaatacatgtccattttggagaaattgcagtaac 15305216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 734609 - 734504
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg-ttttctata 297  Q
    ||||||||||| ||||| |||| |||||| ||||||| | |  |||||  || |||||||||||||| ||| ||||||||| | | |||| |||||||||    
T  734609 cctccgtttcacaatacttgtccattttgaagaaattactcataccaaagaatcaaataaattttgtcattattgatgaaattctttgtgtttttctata 734510  T
Q  298 ataccc 303  Q
    ||||||    
T  734509 ataccc 734504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 16054173 - 16054220
Alignment:
Q  253 aaataaattttgttatttttgatgaaaatatgtgtgttttctataata 300  Q
    |||||||||||||||||||| |||||| | ||||| ||||||||||||    
T  16054173 aaataaattttgttattttttatgaaattttgtgttttttctataata 16054220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 43275669 - 43275565
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 298  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275669 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 43275570  T
Q  299 taccc 303  Q
    |||||    
T  43275569 taccc 43275565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 30999791 - 30999689
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataata 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30999791 tccgtttcaaaatacatgtcaattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataata 30999692  T
Q  301 ccc 303  Q
    |||    
T  30999691 ccc 30999689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 2540204 - 2540097
Alignment:
Q  198 tcctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttcta 295  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2540204 tcctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttcta 2540105  T
Q  296 taataccc 303  Q
    ||||||||    
T  2540104 taataccc 2540097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 40919001 - 40918897
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 298  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  40919001 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaacatgtgtgttttctataa 40918902  T
Q  299 taccc 303  Q
    |||||    
T  40918901 taccc 40918897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 3585456 - 3585562
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  3585456 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctat 3585555  T
Q  297 aataccc 303  Q
    |||||||    
T  3585556 aataccc 3585562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 11174495 - 11174389
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  11174495 cctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 11174396  T
Q  297 aataccc 303  Q
    |||||||    
T  11174395 aataccc 11174389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 203 - 303
Target Start/End: Complemental strand, 11646593 - 11646491
Alignment:
Q  203 cgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataata 300  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  11646593 cgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctataata 11646494  T
Q  301 ccc 303  Q
    |||    
T  11646493 ccc 11646491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 40058575 - 40058469
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  40058575 cctccgtttcaaaatacatgtccatttcggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 40058476  T
Q  297 aataccc 303  Q
    |||||||    
T  40058475 aataccc 40058469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 37345576 - 37345682
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  37345576 cctccgtttcaaaatacatgtccattttgaagaaattgcaccaaccaagaaaccaaataaattttgttatttttaatgaaaatatgtgtgtgttttctat 37345675  T
Q  297 aataccc 303  Q
    |||||||    
T  37345676 aataccc 37345682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 7146920 - 7147024
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctataa 298  Q
    |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  7146920 tccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataa 7147019  T
Q  299 taccc 303  Q
    |||||    
T  7147020 taccc 7147024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 36068085 - 36068191
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  36068085 cctccgtttcaaaatacatgtccattttggaggaattgtactaaccaaaaaaccaaataaattttgttatttttaatgaaaatatatgtgtgttttctat 36068184  T
Q  297 aataccc 303  Q
    |||||||    
T  36068185 aataccc 36068191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 27035002 - 27035107
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgt-tttctata 297  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| ||||| ||| ||||||||    
T  27035002 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttatttttgatgaaattatgtctgtgtttctata 27035101  T
Q  298 ataccc 303  Q
    ||||||    
T  27035102 ataccc 27035107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 20546559 - 20546455
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 298  Q
    ||||| |||||||||| ||||| |||||| ||||||||||  || |||||||  ||||||||||||||||||||||||||| |||||||||||| ||| |    
T  20546559 cctccatttcaaaatatatgtccattttgaagaaattgcaacaatcaagaaattaaataaattttgttatttttgatgaaattatgtgtgttttatatga 20546460  T
Q  299 taccc 303  Q
    |||||    
T  20546459 taccc 20546455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 292
Target Start/End: Original strand, 28562425 - 28562519
Alignment:
Q  198 tcctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt 292  Q
    |||||||||||||||||| |||| |||||| ||||||| |||  |||||| || ||||||||| |||| ||||||||||||| | | ||||||||    
T  28562425 tcctccgtttcaaaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgtttt 28562519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 10646596 - 10646645
Alignment:
Q  198 tcctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  10646596 tcctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 10646645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 8697946 - 8697898
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  8697946 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 8697898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 41308009 - 41307961
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  41308009 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 41307961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 45278749 - 45278701
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  45278749 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 45278701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 28326883 - 28326825
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatac 301  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  28326883 accaagaaatcaaataaattttgttatttttgatgaaattatgtgt-ttttcaataatac 28326825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 40486501 - 40486453
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||||||    
T  40486501 cctccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaag 40486453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 26629228 - 26629182
Alignment:
Q  252 caaataaattttgttatttttgatgaaaatatgtgtgttttctataa 298  Q
    ||||||||||||||||| |||||||||| ||||||| ||||||||||    
T  26629228 caaataaattttgttatgtttgatgaaattatgtgttttttctataa 26629182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 303
Target Start/End: Original strand, 28567923 - 28568031
Alignment:
Q  198 tcctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg---ttttct 294  Q
    |||||||||||||||||| |||| |||||| ||||||| |||  |||||  || ||||||||| |||| |||||| |||||| | | ||||   ||||||    
T  28567923 tcctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctttttct 28568022  T
Q  295 ataataccc 303  Q
    |||||||||    
T  28568023 ataataccc 28568031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 303
Target Start/End: Original strand, 28575516 - 28575624
Alignment:
Q  198 tcctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg---ttttct 294  Q
    |||||||||||||||||| |||| |||||| ||||||| |||  |||||  || ||||||||| |||| |||||| |||||| | | ||||   ||||||    
T  28575516 tcctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctttttct 28575615  T
Q  295 ataataccc 303  Q
    |||||||||    
T  28575616 ataataccc 28575624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 13881174 - 13881134
Alignment:
Q  252 caaataaattttgttatttttgatgaaaatatgtgtgtttt 292  Q
    |||||||||||||||||||||||||||| | |||| |||||    
T  13881174 caaataaattttgttatttttgatgaaattgtgtgcgtttt 13881134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 30906917 - 30906869
Alignment:
Q  244 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt 292  Q
    ||||||| ||||||||||||||||||||| |||||| | |||| |||||    
T  30906917 caagaaatcaaataaattttgttattttttatgaaattttgtgagtttt 30906869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 36881287 - 36881391
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 298  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36881287 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 36881386  T
Q  299 taccc 303  Q
    |||||    
T  36881387 taccc 36881391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 198860 - 198966
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  198860 cctccgtttcaaaatacatgtccattttggagaaattgcactgaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctat 198959  T
Q  297 aataccc 303  Q
    |||||||    
T  198960 aataccc 198966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 13364848 - 13364954
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  13364848 cctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 13364947  T
Q  297 aataccc 303  Q
    |||||||    
T  13364948 aataccc 13364954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 19241940 - 19241834
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 296  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  19241940 cctccgtttcaaaatacatgtccattttggtgaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctat 19241841  T
Q  297 aataccc 303  Q
    |||||||    
T  19241840 aataccc 19241834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 23088203 - 23088097
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    |||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  23088203 cctctgtttcaaaatatatgtctattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 23088104  T
Q  297 aataccc 303  Q
    |||||||    
T  23088103 aataccc 23088097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 29375143 - 29375249
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||    
T  29375143 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttcttatttttgatgaaaatatgtgtgtgttttctat 29375242  T
Q  297 aataccc 303  Q
    |||||||    
T  29375243 aataccc 29375249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 46694382 - 46694276
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  46694382 cctccgtttcaaaatacatgtcctttttggagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 46694283  T
Q  297 aataccc 303  Q
    |||||||    
T  46694282 aataccc 46694276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 3383083 - 3383187
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctataa 298  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  3383083 tccgtttcaaaatatatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 3383182  T
Q  299 taccc 303  Q
    |||||    
T  3383183 taccc 3383187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 203 - 301
Target Start/End: Original strand, 43750146 - 43750246
Alignment:
Q  203 cgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataata 300  Q
    |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  43750146 cgtttcaaaatacatgtccattttggagaaattggagtaaccaagaaaccaaataaattttgttatttttgatgaaattatatgtgtgttttctataata 43750245  T
Q  301 c 301  Q
    |    
T  43750246 c 43750246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 32835226 - 32835138
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgt 289  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  32835226 tccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaacaaataaattttgttatttttgatgaaattatgtgtgt 32835138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 188 - 302
Target Start/End: Original strand, 13702762 - 13702879
Alignment:
Q  188 aaaaatatactcc-tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatg 284  Q
    ||||| ||||||| ||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||  |||||    
T  13702762 aaaaagatactccatccattttaaaatacatgcctattttggagaaattgcagtaaccaagaaaccaaataaattttgatatttttgatgaaattatatg 13702861  T
Q  285 tgtgttttctataatacc 302  Q
    | ||||||||||||||||    
T  13702862 tttgttttctataatacc 13702879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 27707436 - 27707363
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttattttt 272  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27707436 cctccgtttcgaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttattttt 27707363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 44277503 - 44277455
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44277503 cctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaag 44277455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 48820512 - 48820444
Alignment:
Q  211 aatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa 279  Q
    ||||||||| ||||||||||||||| |  || |||| ||||||||||||||||||||||||||||||||    
T  48820512 aatacatgtttattttggagaaattacggtatccaataaaccaaataaattttgttatttttgatgaaa 48820444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 37293442 - 37293539
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctat 296  Q
    ||||||||||| ||||| |||| |||||| ||||||| |||  |||||| || ||||||||| |||| ||||||||||||| | ||||| ||||||||    
T  37293442 cctccgtttcacaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctgtgttttttctat 37293539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 12094587 - 12094635
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  12094587 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 12094635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 48963152 - 48963223
Alignment:
Q  191 aatatactcc-tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaatttt 263  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||  |||||||| ||| ||||||| ||||    
T  48963152 aatatactccctccgtttcaaaatacatatctattttggagaaattg--ctaaccaataaatcaaataattttt 48963223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 19911514 - 19911562
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  19911514 cctccgtttcaaaatacatgttcattttggagaaattgcagtaaccaag 19911562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 44522491 - 44522548
Alignment:
Q  244 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatac 301  Q
    ||||||| |||||||||||| |||||||| ||||||  |||||| |||||||||||||    
T  44522491 caagaaatcaaataaattttattattttttatgaaatcatgtgttttttctataatac 44522548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 4235760 - 4235803
Alignment:
Q  203 cgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  4235760 cgtttcaaaatacatgtcg-ttttggagaaattgcactaaccaag 4235803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 38805250 - 38805298
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    ||||||||| |||||||||||| ||||| ||||||||||| ||||||||    
T  38805250 cctccgttttaaaatacatgtccattttagagaaattgcagtaaccaag 38805298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 53559880 - 53559789
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt 292  Q
    ||||||||| ||||| |||   ||||| ||||||| |||  | ||||||| ||||||||| |||||||||||||||||| | | ||||||||    
T  53559880 tccgtttcacaatacttgttgcttttgaagaaattacacatatcaagaaaacaaataaatgttgttatttttgatgaaattctctgtgtttt 53559789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 1455374 - 1455328
Alignment:
Q  245 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttt 291  Q
    |||||| |||||||||||||||||||||||| ||| ||| |||||||    
T  1455374 aagaaatcaaataaattttgttatttttgataaaattatttgtgttt 1455328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 4226716 - 4226759
Alignment:
Q  203 cgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||    
T  4226716 cgtttcaaaatacatgtcg-ttttggagaaattgcagtaaccaag 4226759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 19897152 - 19897093
Alignment:
Q  246 agaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataataccc 303  Q
    ||||| ||||||||||||||||||||| ||||||   | ||||| |||||||||||||||    
T  19897152 agaaatcaaataaattttgttattttttatgaaattctttgtgttttttctataataccc 19897093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 19912210 - 19912174
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaatt 235  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  19912210 cctccgtttcaaaatacatgtccattttagagaaatt 19912174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 38806377 - 38806341
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaatt 235  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  38806377 cctccgtttcaaaatacatgtccattttagagaaatt 38806341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 7761306 - 7761410
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 298  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7761306 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 7761405  T
Q  299 taccc 303  Q
    |||||    
T  7761406 taccc 7761410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 1605584 - 1605690
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  1605584 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 1605683  T
Q  297 aataccc 303  Q
    |||||||    
T  1605684 aataccc 1605690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 29260197 - 29260303
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  29260197 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 29260296  T
Q  297 aataccc 303  Q
    |||||||    
T  29260297 aataccc 29260303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 30734753 - 30734649
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctataa 298  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  30734753 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 30734654  T
Q  299 taccc 303  Q
    |||||    
T  30734653 taccc 30734649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 13757214 - 13757319
Alignment:
Q  200 ctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctata 297  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  13757214 ctccgtttcaaaatacatgtccattttggagaaattacactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctata 13757313  T
Q  298 ataccc 303  Q
    ||||||    
T  13757314 ataccc 13757319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 8626487 - 8626593
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  8626487 cctccgtttcaaaatacatgtccattttgaagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 8626586  T
Q  297 aataccc 303  Q
    |||||||    
T  8626587 aataccc 8626593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 30734879 - 30734776
Alignment:
Q  200 ctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataat 299  Q
    ||||||||||||||||||||| |||||| |||||||||| |||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  30734879 ctccgtttcaaaatacatgtccattttgaagaaattgcagtaacaaaaaaatcaaataaattttgttatttttgatgaaattatgtgtgttttctataat 30734780  T
Q  300 accc 303  Q
    ||||    
T  30734779 accc 30734776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 15064966 - 15064876
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgt 289  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15064966 cctccgtttcaaaatacatgtccattttagagaaattgcagcaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgt 15064876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 31559998 - 31559902
Alignment:
Q  209 aaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtg--tgttttctataataccc 303  Q
    |||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  31559998 aaaatacatgtccattttggagaaattgcattaaccaaaaaatcaaataaattttgttatttttgatgaaaatatgtgtatgttttctgtaataccc 31559902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 303
Target Start/End: Original strand, 17942452 - 17942556
Alignment:
Q  203 cgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaata--aattttgttatttttgatgaaaatatgt--gtgttttctataa 298  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||    |||| ||||||||||||||| |||||  ||||| |||||||    
T  17942452 cgtttcaaaatacatgtccatttttgagaaattgcagtaaccaagaaaccaaatatttttttttttatttttgatgaaattatgtgcgtgttctctataa 17942551  T
Q  299 taccc 303  Q
    |||||    
T  17942552 taccc 17942556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 8235639 - 8235735
Alignment:
Q  209 aaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataataccc 303  Q
    |||||||||||  |||||| |||||||||| |||||||||||| ||||||| |||||||||||| |||| |  || |||||||||||||||||||||    
T  8235639 aaaatacatgtacattttgaagaaattgcagtaaccaagaaacgaaataaaatttgttattttttatgatattatgtgtgtgttttctataataccc 8235735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 4129440 - 4129538
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    ||||||||||||||||||| || | ||||||||||||||| |||||        |||||||||||||||||||| |||||||||  ||||||||||||||    
T  4129440 cctccgtttcaaaatacatatccactttggagaaattgcagtaacc--------aaataaattttgttattttttatgaaaatatgtgtgtgttttctat 4129531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 19996763 - 19996715
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19996763 cctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaag 19996715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 21277659 - 21277600
Alignment:
Q  245 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtg-ttttctataataccc 303  Q
    |||||| ||||||||||||||||||||| |||||||| | |||| |||||||||||||||    
T  21277659 aagaaatcaaataaattttgttattttttatgaaaatttatgtgtttttctataataccc 21277600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 33845502 - 33845451
Alignment:
Q  252 caaataaattttgttatttttgatgaaaatatgtgtgttttctataataccc 303  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||| |||||    
T  33845502 caaataaattttgttatttttgatgaaattatgtattttttctatagtaccc 33845451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 14287038 - 14287099
Alignment:
Q  243 ccaagaaaccaaataaattttgttatttttgatgaaaatatgtg-tgttttctataataccc 303  Q
    |||| ||| ||||||||||||||||||||| |||||| | |||| | |||||||||||||||    
T  14287038 ccaataaatcaaataaattttgttattttttatgaaattctgtgcttttttctataataccc 14287099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 11370711 - 11370679
Alignment:
Q  245 aagaaaccaaataaattttgttatttttgatga 277  Q
    |||||| ||||||||||||||||||||||||||    
T  11370711 aagaaatcaaataaattttgttatttttgatga 11370679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 19996327 - 19996363
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaatt 235  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  19996327 cctccgtttcaaaatacatgtccattttagagaaatt 19996363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 47110456 - 47110560
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 298  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47110456 cctccatttcaaaatacatgtccattttggagaaattgcactaaccaagaaacaaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 47110555  T
Q  299 taccc 303  Q
    |||||    
T  47110556 taccc 47110560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 10981513 - 10981619
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  10981513 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 10981612  T
Q  297 aataccc 303  Q
    |||||||    
T  10981613 aataccc 10981619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 27813816 - 27813922
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatg--tgtgttttctat 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  27813816 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtatgtgttttctat 27813915  T
Q  297 aataccc 303  Q
    |||||||    
T  27813916 aataccc 27813922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 36453396 - 36453290
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctat 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||    
T  36453396 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgttttttctat 36453297  T
Q  297 aataccc 303  Q
    |||||||    
T  36453296 aataccc 36453290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 25614621 - 25614519
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataata 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  25614621 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctgaaata 25614522  T
Q  301 ccc 303  Q
    |||    
T  25614521 ccc 25614519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 40348967 - 40349071
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctataa 298  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  40348967 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 40349066  T
Q  299 taccc 303  Q
    |||||    
T  40349067 taccc 40349071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 25060181 - 25060133
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  25060181 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 25060133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 16360442 - 16360493
Alignment:
Q  252 caaataaattttgttatttttgatgaaaatatgtgtgttttctataataccc 303  Q
    |||||||||||||||||||||||||||| | ||||| |||||||||||||||    
T  16360442 caaataaattttgttatttttgatgaaattctgtgttttttctataataccc 16360493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 16662146 - 16662205
Alignment:
Q  244 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataataccc 303  Q
    |||||||  ||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  16662146 caagaaataaaataaattttgttatttttgatgaaaatttgtgttttttttataataccc 16662205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 17636506 - 17636565
Alignment:
Q  244 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataataccc 303  Q
    |||||||  ||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  17636506 caagaaataaaataaattttgttatttttgatgaaaatttgtgttttttttataataccc 17636565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 7743625 - 7743564
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgt-tttctataatacc 302  Q
    ||||||| | |||||||||||||||||||||||||||| ||||||| | |||||||||||||    
T  7743625 accaagatatcaaataaattttgttatttttgatgaaattatgtgtttctttctataatacc 7743564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 2911596 - 2911548
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  2911596 cctccatttcaaaatacatgtccattttggagaaattgcagtaaccaag 2911548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 2910851 - 2910900
Alignment:
Q  187 taaaaatatactcc-tccgtttcaaaatacatgtctattttggagaaatt 235  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  2910851 taaaaatatactccctccgtttcaaaatacatgtctattttaaagaaatt 2910900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 3091565 - 3091628
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataataccc 303  Q
    ||||| ||| ||||||||||||||||||||||||||||   | ||||| |||||||||||||||    
T  3091565 accaaaaaatcaaataaattttgttatttttgatgaaattctttgtgttttttctataataccc 3091628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 279
Target Start/End: Original strand, 37983206 - 37983241
Alignment:
Q  244 caagaaaccaaataaattttgttatttttgatgaaa 279  Q
    ||||||| ||||||||||||||||||||||||||||    
T  37983206 caagaaatcaaataaattttgttatttttgatgaaa 37983241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 192 - 303
Target Start/End: Complemental strand, 179 - 65
Alignment:
Q  192 atatactc-ctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtg 288  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  179 atatactctctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 80  T
Q  289 ttttctataataccc 303  Q
    |||||||||||||||    
T  79 ttttctataataccc 65  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 21310430 - 21310536
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  21310430 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 21310529  T
Q  297 aataccc 303  Q
    |||||||    
T  21310530 aataccc 21310536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 25704656 - 25704762
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  25704656 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 25704755  T
Q  297 aataccc 303  Q
    |||||||    
T  25704756 aataccc 25704762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 24706517 - 24706413
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctataa 298  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  24706517 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 24706418  T
Q  299 taccc 303  Q
    |||||    
T  24706417 taccc 24706413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 14261049 - 14261155
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  14261049 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgataaaaatatgtgtgtgttttctat 14261148  T
Q  297 aataccc 303  Q
    |||||||    
T  14261149 aataccc 14261155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 22321537 - 22321433
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctataa 298  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  22321537 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttctataa 22321438  T
Q  299 taccc 303  Q
    |||||    
T  22321437 taccc 22321433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 12071566 - 12071672
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  12071566 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaataaactaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 12071665  T
Q  297 aataccc 303  Q
    |||||||    
T  12071666 aataccc 12071672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 40122757 - 40122651
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  40122757 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 40122658  T
Q  297 aataccc 303  Q
    |||||||    
T  40122657 aataccc 40122651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 34324855 - 34324748
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaa-taaattttgttatttttgatgaaaata--tgtgtgttttcta 295  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  |||||||||||||    
T  34324855 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaattaaattttgttatttttgatgaaaatatgtgtgtgttttcta 34324756  T
Q  296 taataccc 303  Q
    ||||||||    
T  34324755 taataccc 34324748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 199 - 302
Target Start/End: Complemental strand, 21661807 - 21661702
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  21661807 cctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctat 21661708  T
Q  297 aatacc 302  Q
    ||||||    
T  21661707 aatacc 21661702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 199 - 302
Target Start/End: Complemental strand, 21670571 - 21670466
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  21670571 cctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaatttttttatttttgatgaaaatatgtgtgtgttttctat 21670472  T
Q  297 aatacc 302  Q
    ||||||    
T  21670471 aatacc 21670466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 44568844 - 44568948
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctataa 298  Q
    |||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  44568844 tccgtttcaaaatacatgtccattttgaagaaattgcactaaccaaaaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttctataa 44568943  T
Q  299 taccc 303  Q
    |||||    
T  44568944 taccc 44568948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 50767871 - 50767975
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataa 298  Q
    ||||||||||||||||| |  ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  50767871 tccgtttcaaaatacatattcattttagagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctataa 50767970  T
Q  299 taccc 303  Q
    |||||    
T  50767971 taccc 50767975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 20249283 - 20249179
Alignment:
Q  200 ctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgt-tttctataa 298  Q
    ||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  20249283 ctccgtttcaaaatacatgtccattttggataaattgtattaaccaagaaaccaaataaattttgttatttttgaagaaattatgtgtgtgtttctataa 20249184  T
Q  299 taccc 303  Q
    |||||    
T  20249183 taccc 20249179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 199 - 302
Target Start/End: Original strand, 31892243 - 31892344
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 298  Q
    ||||||| |||||||||||||  |||||  |||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||||||||||    
T  31892243 cctccgtatcaaaatacatgttcattttaaagaaattgcagtaaccaagaaatcaaataaattttattatttttgatgaaatta--tgtgttttctataa 31892340  T
Q  299 tacc 302  Q
    ||||    
T  31892341 tacc 31892344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 1988046 - 1988146
Alignment:
Q  204 gtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatg--tgtgttttctataatac 301  Q
    |||| |||||| |||||||||| |||||||||||| |||| |||||| |||||||||||| ||||||||||||||| ||||  |||||||||||||||||    
T  1988046 gttttaaaatatatgtctattt-ggagaaattgcagtaactaagaaatcaaataaattttattatttttgatgaaattatgtatgtgttttctataatac 1988144  T
Q  302 cc 303  Q
    ||    
T  1988145 cc 1988146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 20714577 - 20714514
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg---ttttctataatacc 302  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||||   ||||||||||||||    
T  20714577 accaataaatcaaataaattttgttatttttgatgaaactatgtgtgtgtttttctataatacc 20714514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 48652268 - 48652305
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaaa 279  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  48652268 accaagaaatcaaataaattttgttatttttgatgaaa 48652305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 19361662 - 19361700
Alignment:
Q  209 aaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  19361662 aaaatacatgtccattttggagaaattgcagtaaccaag 19361700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 26676837 - 26676732
Alignment:
Q  200 ctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatat--gtgtgttttctata 297  Q
    |||||||||| ||||| | || |||||| ||||||| |||  |||||| || ||||||||| |||| |||||| |||||| | |  |||| |||||||||    
T  26676837 ctccgtttcacaatacttatccattttgaagaaattacacataccaaggaatcaaataaatgttgtcattttttatgaaattcttcgtgttttttctata 26676738  T
Q  298 ataccc 303  Q
    ||||||    
T  26676737 ataccc 26676732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 3518913 - 3519019
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  3518913 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 3519012  T
Q  297 aataccc 303  Q
    |||||||    
T  3519013 aataccc 3519019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 1102508 - 1102614
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  1102508 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 1102607  T
Q  297 aataccc 303  Q
    |||||||    
T  1102608 aataccc 1102614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 23366794 - 23366900
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  23366794 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttctat 23366893  T
Q  297 aataccc 303  Q
    |||||||    
T  23366894 aataccc 23366900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 39938175 - 39938281
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  39938175 cctccgtttcaaaatacatgaccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 39938274  T
Q  297 aataccc 303  Q
    |||||||    
T  39938275 aataccc 39938281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 12970011 - 12969905
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtg--tgttttctat 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  | ||||||||    
T  12970011 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtatattttctat 12969912  T
Q  297 aataccc 303  Q
    |||||||    
T  12969911 aataccc 12969905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 37674009 - 37673903
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  37674009 cctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 37673910  T
Q  297 aataccc 303  Q
    |||||||    
T  37673909 aataccc 37673903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 1646317 - 1646398
Alignment:
Q  222 attttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataataccc 303  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1646317 attttggagaaattgcagcaaccaagaaactaaataaattttgttatttttgatgaaaatatgtgtgttttctataataccc 1646398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 34224426 - 34224378
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  34224426 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 34224378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 35179164 - 35179114
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt 292  Q
    |||||||||  ||||||||||||||||||||||||||| | ||||||||||    
T  35179164 accaagaaatgaaataaattttgttatttttgatgaaattttgtgtgtttt 35179114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 1002997 - 1002922
Alignment:
Q  204 gtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa 279  Q
    |||||||||||||||||  |||||  || ||| |||  || |||||| |||||||||||| |||||||||||||||    
T  1002997 gtttcaaaatacatgtcgcttttgaggatattacacatactaagaaatcaaataaattttattatttttgatgaaa 1002922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 32840401 - 32840354
Alignment:
Q  245 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt 292  Q
    |||||| |||||||||||||||||||||||||||| | ||||| ||||    
T  32840401 aagaaatcaaataaattttgttatttttgatgaaattctgtgtttttt 32840354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 19976380 - 19976442
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaaaatatgtg-tgttttctataataccc 303  Q
    ||||||||| ||||||||||||| || ||||||| ||| |||||| | |||||||||||||||    
T  19976380 accaagaaatcaaataaattttggtacttttgataaaattatgtgtttttttctataataccc 19976442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 18078104 - 18078140
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaa 278  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  18078104 accaaaaaatcaaataaattttgttatttttgatgaa 18078140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 284338 - 284444
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  284338 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctat 284437  T
Q  297 aataccc 303  Q
    |||||||    
T  284438 aataccc 284444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 23045551 - 23045445
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  23045551 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 23045452  T
Q  297 aataccc 303  Q
    |||||||    
T  23045451 aataccc 23045445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 47038120 - 47038018
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataata 300  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47038120 tccgtttcaaaatacatgtccattttggagaaattgtactaactaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgttttctataata 47038021  T
Q  301 ccc 303  Q
    |||    
T  47038020 ccc 47038018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 321618 - 321734
Alignment:
Q  187 taaaaatatactcc-tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--t 283  Q
    ||||||| |||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  321618 taaaaatttactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt 321717  T
Q  284 gtgtgttttctataata 300  Q
    |||||||||||||||||    
T  321718 gtgtgttttctataata 321734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 24772177 - 24772071
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctat 296  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  24772177 cctccgtttcaaaatacatgtccattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtattttctat 24772078  T
Q  297 aataccc 303  Q
    |||||||    
T  24772077 aataccc 24772071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 27211236 - 27211130
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 296  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  27211236 cctccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaccaaataaattttgttatttttgaggaaattatatgtgtgttttctat 27211137  T
Q  297 aataccc 303  Q
    |||||||    
T  27211136 aataccc 27211130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 40783929 - 40783823
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 296  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  40783929 cctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 40783830  T
Q  297 aataccc 303  Q
    |||||||    
T  40783829 aataccc 40783823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 46771644 - 46771748
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataa 298  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||  || ||||||||||||||||    
T  46771644 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaattaaataaattttgttatttttgatgaaattatgtgtgtgttttctataa 46771743  T
Q  299 taccc 303  Q
    |||||    
T  46771744 taccc 46771748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 33082765 - 33082856
Alignment:
Q  214 acatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctataataccc 303  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  |||||||||||||||    
T  33082765 acatgtctattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaattatgtgtgtattttctataataccc 33082856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 192 - 303
Target Start/End: Original strand, 23526237 - 23526351
Alignment:
Q  192 atatactcct-ccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtg 288  Q
    |||||||||| || |||||||||||||||  ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||  || ||||||    
T  23526237 atatactccttccatttcaaaatacatgttcattttggagaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtg 23526336  T
Q  289 ttttctataataccc 303  Q
    |||||||||||||||    
T  23526337 ttttctataataccc 23526351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 52037382 - 52037290
Alignment:
Q  209 aaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatac 301  Q
    |||||||||||| ||||| ||||||||||| || |||| |||||||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  52037382 aaaatacatgtccattttagagaaattgcattatccaaaaaaccaaataaattttattatttttgataaaattatgtgtgttttctataatac 52037290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 1838053 - 1837995
Alignment:
Q  245 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataataccc 303  Q
    |||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  1838053 aagaaatcaaataaattttgttatttttgatgaaattatgtgttttttctataataccc 1837995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 1749357 - 1749415
Alignment:
Q  244 caagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataata 300  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  1749357 caagaaatcaaataaattttgttatttttgatgaaattatatgtgtgttttctataata 1749415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 52478016 - 52478074
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataata 300  Q
    ||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  52478016 accaagaaatcaaataaattttgttatttttgatgaaattttgtgttttttctataata 52478074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 3943065 - 3943113
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  3943065 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 3943113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 9588675 - 9588723
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  9588675 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 9588723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 41959083 - 41959131
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  41959083 cctccgtttcaaaatacatgtccattttggagaaattgcaataaccaag 41959131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 13985037 - 13984991
Alignment:
Q  201 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||    
T  13985037 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 13984991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 51065028 - 51064935
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt 292  Q
    ||||||||||| ||||| |||| |||||  ||||||| |||  |||||| || ||||||||| |||| ||||||||||||| | | ||||||||    
T  51065028 cctccgtttcacaatacttgtccattttaaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgtttt 51064935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 9589667 - 9589631
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaatt 235  Q
    |||||||||||||||||||||||||||| ||||||||    
T  9589667 cctccgtttcaaaatacatgtctattttagagaaatt 9589631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 40564293 - 40564241
Alignment:
Q  208 caaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaat 260  Q
    ||||||| ||||| |||||||| |||| ||| |||||||||||||||||||||    
T  40564293 caaaatatatgtccattttggaaaaatcgcagtaaccaagaaaccaaataaat 40564241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 44227853 - 44227889
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaatt 235  Q
    |||||||||||||||||||||| ||||||||||||||    
T  44227853 cctccgtttcaaaatacatgtccattttggagaaatt 44227889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 44228276 - 44228228
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    ||||| |||||||||||||||| ||||||||||||||||  ||||||||    
T  44228276 cctccatttcaaaatacatgtccattttggagaaattgctgtaaccaag 44228228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 14351989 - 14351954
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatga 277  Q
    ||||||||| ||||||||||||||||||||||||||    
T  14351989 accaagaaaacaaataaattttgttatttttgatga 14351954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 3657125 - 3657175
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt 292  Q
    ||||||||| ||||||||||||||||||||| |||||| | ||| ||||||    
T  3657125 accaagaaatcaaataaattttgttatttttaatgaaattttgtatgtttt 3657175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 18396754 - 18396803
Alignment:
Q  253 aaataaattttgttatttttgatgaaaatatgtgtg--ttttctataata 300  Q
    |||||||||||||||||||| |||||| ||||||||  ||||||||||||    
T  18396754 aaataaattttgttattttttatgaaattatgtgtggtttttctataata 18396803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 34458950 - 34458892
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataata 300  Q
    ||||||||| ||||||||||||  ||||||| |||||| | ||||| ||||||||||||    
T  34458950 accaagaaatcaaataaatttttctattttttatgaaattctgtgttttttctataata 34458892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 40261501 - 40261451
Alignment:
Q  242 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt 292  Q
    ||||||||| |||||||||||||||| ||||||||||| |  |||||||||    
T  40261501 accaagaaatcaaataaattttgttaattttgatgaaattgcgtgtgtttt 40261451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 1168369 - 1168414
Alignment:
Q  202 ccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||  ||||| |||||||||| ||||||||    
T  1168369 ccgtttcaaaatacatgtcgtttttgaagaaattgcagtaaccaag 1168414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 7765072 - 7765124
Alignment:
Q  253 aaataaattttgttatttttgatgaaa--atatgtgtgttttctataataccc 303  Q
    ||||||||||||||||||||| |||||  ||||||||||||||  ||||||||    
T  7765072 aaataaattttgttatttttggtgaaattatatgtgtgttttccgtaataccc 7765124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 40562797 - 40562748
Alignment:
Q  254 aataaattttgttatttttgatgaa-aatatgtgtgttttctataatacc 302  Q
    |||||||||||||||||||||| ||  |||| ||||||||||||||||||    
T  40562797 aataaattttgttatttttgataaattatatatgtgttttctataatacc 40562748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 3943799 - 3943763
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaatt 235  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  3943799 cctccgtttcaaaatacatgtccattttagagaaatt 3943763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 41959845 - 41959809
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaatt 235  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  41959845 cctccgtttcaaaatacatgtccattttagagaaatt 41959809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 45459 - 45565
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctat 296  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  45459 cctccgtttcaaaatacatgttcattttggagaaattgcaccaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtattttctat 45558  T
Q  297 aataccc 303  Q
    |||||||    
T  45559 aataccc 45565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 525 - 431
Alignment:
Q  209 aaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataataccc 303  Q
    |||||||||||  ||||||| ||||||||| ||| ||| ||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  525 aaaatacatgttcattttggcgaaattgcagtaatcaaaaaatcaaataaattttgttatttttgataaaattatgtgtgttttttataataccc 431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 175 - 273
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 296  Q
    ||||||||||||||||||| || | ||||||||||||||| |||||        |||||||||||||||||||| |||||||||  ||||||||||||||    
T  175 cctccgtttcaaaatacatatccactttggagaaattgcagtaacc--------aaataaattttgttattttttatgaaaatatgtgtgtgttttctat 266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 23472 - 23520
Alignment:
Q  199 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 247  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  23472 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 23520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 70874 - 70922
Alignment:
Q  244 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt 292  Q
    ||||||| |||||||||||||||||||||||||||| | ||||||||||    
T  70874 caagaaatcaaataaattttgttatttttgatgaaattctgtgtgtttt 70922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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