View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9690_low_14 (Length: 302)

Name: NF9690_low_14
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9690_low_14
NF9690_low_14
[»] chr2 (15 HSPs)
chr2 (215-289)||(31387070-31387144)
chr2 (215-294)||(31359922-31360001)
chr2 (240-294)||(31255796-31255850)
chr2 (229-294)||(31419276-31419341)
chr2 (240-294)||(31307198-31307252)
chr2 (229-294)||(31320991-31321056)
chr2 (230-294)||(31281796-31281860)
chr2 (215-278)||(31292802-31292865)
chr2 (244-294)||(31374755-31374805)
chr2 (97-154)||(17383777-17383834)
chr2 (110-166)||(42094233-42094289)
chr2 (97-155)||(37810163-37810221)
chr2 (97-146)||(42029415-42029464)
chr2 (235-283)||(31180681-31180729)
chr2 (97-145)||(33171673-33171721)
[»] chr5 (3 HSPs)
chr5 (100-154)||(32493329-32493383)
chr5 (103-166)||(3907677-3907740)
chr5 (97-155)||(1570008-1570066)
[»] chr1 (5 HSPs)
chr1 (109-166)||(38663704-38663761)
chr1 (113-166)||(7444334-7444387)
chr1 (105-167)||(18075216-18075278)
chr1 (113-146)||(39184184-39184217)
chr1 (97-166)||(49822581-49822650)
[»] chr8 (2 HSPs)
chr8 (105-166)||(42072713-42072774)
chr8 (105-154)||(40175919-40175968)
[»] chr3 (6 HSPs)
chr3 (97-166)||(14345168-14345237)
chr3 (97-166)||(36480724-36480793)
chr3 (109-166)||(40117779-40117836)
chr3 (97-165)||(45332561-45332629)
chr3 (97-140)||(35357396-35357439)
chr3 (105-146)||(33244714-33244755)
[»] chr7 (4 HSPs)
chr7 (103-146)||(49106929-49106972)
chr7 (97-154)||(2276294-2276351)
chr7 (109-166)||(12275767-12275824)
chr7 (99-140)||(24516575-24516616)
[»] chr4 (2 HSPs)
chr4 (105-148)||(32286302-32286345)
chr4 (97-166)||(21433890-21433959)


Alignment Details
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 31387144 - 31387070
Alignment:
Q  215 taacttattcccagtatgatatttctttcagagacctcagctttaacaaattaagtggaacaattccgagtacct 289  Q
    ||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31387144 taactcattctcaatatgatatctctttcagagacctcagctttaacaaattaagtggaacgattccgagtacct 31387070  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 215 - 294
Target Start/End: Complemental strand, 31360001 - 31359922
Alignment:
Q  215 taacttattcccagtatgatatttctttcagagacctcagctttaacaaattaagtggaacaattccgagtacctatgct 294  Q
    |||||||||| || |||||||| ||||||||||||||||||||||||||  |||||||||||||||| ||||| ||||||    
T  31360001 taacttattctcaatatgatatctctttcagagacctcagctttaacaacataagtggaacaattccaagtacttatgct 31359922  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 31255850 - 31255796
Alignment:
Q  240 tttcagagacctcagctttaacaaattaagtggaacaattccgagtacctatgct 294  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  31255850 tttcagagacctcagctttaacaacttaagtggaacgattccgagtacctatgct 31255796  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 31419276 - 31419341
Alignment:
Q  229 tatgatatttctttcagagacctcagctttaacaaattaagtggaacaattccgagtacctatgct 294  Q
    |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||| || ||||||    
T  31419276 tatgatatatctttcagagacctcggctttaacaatttaagtggaacaattccgaggacgtatgct 31419341  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 31307252 - 31307198
Alignment:
Q  240 tttcagagacctcagctttaacaaattaagtggaacaattccgagtacctatgct 294  Q
    |||||||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  31307252 tttcagagacctcagctttaacaaattaagtggaatgattccgaggacctatgct 31307198  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 31321056 - 31320991
Alignment:
Q  229 tatgatatttctttcagagacctcagctttaacaaattaagtggaacaattccgagtacctatgct 294  Q
    |||||||| | ||||||||||||||||||||||| |||||| |||||||| ||||||| |||||||    
T  31321056 tatgatatctttttcagagacctcagctttaacagattaagaggaacaatcccgagtaactatgct 31320991  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 31281860 - 31281796
Alignment:
Q  230 atgatatttctttcagagacctcagctttaacaaattaagtggaacaattccgagtacctatgct 294  Q
    ||||||| | |||||||||||||||||||||||   |||||||||||||||| |||| |||||||    
T  31281860 atgatatctttttcagagacctcagctttaacagcataagtggaacaattccaagtatctatgct 31281796  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 31292865 - 31292802
Alignment:
Q  215 taacttattcccagtatgatatttctttcagagacctcagctttaacaaattaagtggaacaat 278  Q
    ||||| |||| || |||||||| ||||||||||||||||||||||| ||  |||||||||||||    
T  31292865 taactcattctcattatgatatatctttcagagacctcagctttaataacataagtggaacaat 31292802  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 31374805 - 31374755
Alignment:
Q  244 agagacctcagctttaacaaattaagtggaacaattccgagtacctatgct 294  Q
    |||||| |||||||||||||  ||||||||||||||||||||| |||||||    
T  31374805 agagacgtcagctttaacaacataagtggaacaattccgagtatctatgct 31374755  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 17383777 - 17383834
Alignment:
Q  97 acactttcttttattggttaaaattcaaatgggtcctaccaaatttatattggaccca 154  Q
    ||||| ||||||||||||||||| ||| |||||||| ||||||||| ||| |||||||    
T  17383777 acactctcttttattggttaaaagtcatatgggtcccaccaaatttctatgggaccca 17383834  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 42094233 - 42094289
Alignment:
Q  110 ttggttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggtg 166  Q
    |||||||||||||| ||||| || ||||||||||||| ||||||| | |||||||||    
T  42094233 ttggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtg 42094289  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 37810163 - 37810221
Alignment:
Q  97 acactttcttttattggttaaaattcaaatgggtcctaccaaatttatattggacccat 155  Q
    ||||| ||||| |||||||| |||||| ||||| || ||||||||||||| ||||||||    
T  37810163 acactctctttgattggttataattcacatgggacccaccaaatttatatgggacccat 37810221  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 42029464 - 42029415
Alignment:
Q  97 acactttcttttattggttaaaattcaaatgggtcctaccaaatttatat 146  Q
    ||||||| ||||||||||||||||||| ||| | || |||||||||||||    
T  42029464 acacttttttttattggttaaaattcacatgagacccaccaaatttatat 42029415  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 31180729 - 31180681
Alignment:
Q  235 atttctttcagagacctcagctttaacaaattaagtggaacaattccga 283  Q
    |||| ||||||||| ||||||||||||||||||| |||| | |||||||    
T  31180729 atttttttcagagatctcagctttaacaaattaactggaccgattccga 31180681  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 33171721 - 33171673
Alignment:
Q  97 acactttcttttattggttaaaattcaaatgggtcctaccaaatttata 145  Q
    ||||| ||||| |||||||||| |||| |||||||| ||||||||||||    
T  33171721 acactctctttgattggttaaatttcacatgggtcccaccaaatttata 33171673  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 32493329 - 32493383
Alignment:
Q  100 ctttcttttattggttaaaattcaaatgggtcctaccaaatttatattggaccca 154  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||| |||||||    
T  32493329 ctttcttttattggttaaaattcatatggatcctactaaatttatatgggaccca 32493383  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 3907677 - 3907740
Alignment:
Q  103 tcttttattggttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggtg 166  Q
    ||||| ||||||||||||||| ||||| || ||||||||||||| ||||||| | |||||||||    
T  3907677 tctttgattggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtg 3907740  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 1570066 - 1570008
Alignment:
Q  97 acactttcttttattggttaaaattcaaatgggtcctaccaaatttatattggacccat 155  Q
    ||||||||||| ||||||||||| | |||||| ||  ||||||||||||| ||||||||    
T  1570066 acactttctttgattggttaaaactaaaatggatctcaccaaatttatatgggacccat 1570008  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 38663761 - 38663704
Alignment:
Q  109 attggttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggtg 166  Q
    ||||||||||||||| ||||| || ||||||||||||| ||||||||| |||||||||    
T  38663761 attggttaaaattcacatgggacccaccaaatttatataggacccatatgatttggtg 38663704  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 7444387 - 7444334
Alignment:
Q  113 gttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggtg 166  Q
    ||||||||||| ||||| |||||||||||||||| ||||||| | |||||||||    
T  7444387 gttaaaattcacatgggacctaccaaatttatatgggacccacatgatttggtg 7444334  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 18075278 - 18075216
Alignment:
Q  105 ttttattggttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggtgt 167  Q
    ||||||||||  ||||||| |||| ||| ||||||||||||| ||||||| | ||||||||||    
T  18075278 ttttattggtctaaattcatatggatcccaccaaatttatatgggacccacatgatttggtgt 18075216  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 39184184 - 39184217
Alignment:
Q  113 gttaaaattcaaatgggtcctaccaaatttatat 146  Q
    ||||||||||| ||||||||||||||||||||||    
T  39184184 gttaaaattcacatgggtcctaccaaatttatat 39184217  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 49822650 - 49822581
Alignment:
Q  97 acactttcttttattggttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggtg 166  Q
    ||||| ||||| ||||||||||||||| |||| ||| | ||||||||||  |||||||||  ||||||||    
T  49822650 acactctctttgattggttaaaattcacatggatcccatcaaatttatacgggacccatataatttggtg 49822581  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 42072774 - 42072713
Alignment:
Q  105 ttttattggttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggtg 166  Q
    ||||||||||||||||| | ||||| || |||||||||||||  |||||||| |||||||||    
T  42072774 ttttattggttaaaatttacatgggacccaccaaatttatatgagacccatatgatttggtg 42072713  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 40175919 - 40175968
Alignment:
Q  105 ttttattggttaaaattcaaatgggtcctaccaaatttatattggaccca 154  Q
    ||||||||||||||||||| |||||  | ||||||||||||| |||||||    
T  40175919 ttttattggttaaaattcacatgggatccaccaaatttatatgggaccca 40175968  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 14345168 - 14345237
Alignment:
Q  97 acactttcttttattggttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggtg 166  Q
    ||||||||||| |||||||||||| || ||| | || ||||||||||||| ||||||| | |||||||||    
T  14345168 acactttctttgattggttaaaatccacatgagacccaccaaatttatatgggacccacatgatttggtg 14345237  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 36480724 - 36480793
Alignment:
Q  97 acactttcttttattggttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggtg 166  Q
    ||||| ||||| ||||||||||||||| ||||| || | ||||||||||| ||||||| | |||||||||    
T  36480724 acactctctttgattggttaaaattcacatgggacccaacaaatttatatgggacccacatgatttggtg 36480793  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 40117836 - 40117779
Alignment:
Q  109 attggttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggtg 166  Q
    ||||||||||||||||||||||||| |||||||||  | ||||||| | |||||||||    
T  40117836 attggttaaaattcaaatgggtcctgccaaatttaagtgggacccacatgatttggtg 40117779  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 45332561 - 45332629
Alignment:
Q  97 acactttcttttattggttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggt 165  Q
    ||||||||||| ||||||||||||||| ||||   | ||||||||||||| ||||||| | ||||||||    
T  45332561 acactttctttaattggttaaaattcacatggaatccaccaaatttatatgggacccacatgatttggt 45332629  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 35357439 - 35357396
Alignment:
Q  97 acactttcttttattggttaaaattcaaatgggtcctaccaaat 140  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||    
T  35357439 acactctctttgattggttaaaattcacatgggtcctaccaaat 35357396  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 33244714 - 33244755
Alignment:
Q  105 ttttattggttaaaattcaaatgggtcctaccaaatttatat 146  Q
    ||||||||||||||||||||||| |||  |||||||||||||    
T  33244714 ttttattggttaaaattcaaatgagtctcaccaaatttatat 33244755  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 49106929 - 49106972
Alignment:
Q  103 tcttttattggttaaaattcaaatgggtcctaccaaatttatat 146  Q
    ||||| |||| |||||||||| ||||||||||||||||||||||    
T  49106929 tctttgattgattaaaattcacatgggtcctaccaaatttatat 49106972  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 2276294 - 2276351
Alignment:
Q  97 acactttcttttattggttaaaattcaaatgggtcctaccaaatttatattggaccca 154  Q
    ||||| ||||| ||||||||||||||| |||| ||| ||||||||||||  |||||||    
T  2276294 acactctctttgattggttaaaattcacatggatcccaccaaatttataagggaccca 2276351  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 12275767 - 12275824
Alignment:
Q  109 attggttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggtg 166  Q
    ||||||||||| ||| ||||| || ||||||||||||| ||||||| | |||||||||    
T  12275767 attggttaaaaatcacatgggacccaccaaatttatatgggacccacatgatttggtg 12275824  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 24516575 - 24516616
Alignment:
Q  99 actttcttttattggttaaaattcaaatgggtcctaccaaat 140  Q
    ||||||||| ||||||||||||||| |||||||| |||||||    
T  24516575 actttctttgattggttaaaattcacatgggtcccaccaaat 24516616  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 32286345 - 32286302
Alignment:
Q  105 ttttattggttaaaattcaaatgggtcctaccaaatttatattg 148  Q
    ||||||||||||||||||| |||| ||| |||||||||||||||    
T  32286345 ttttattggttaaaattcacatggatccaaccaaatttatattg 32286302  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 21433890 - 21433959
Alignment:
Q  97 acactttcttttattggttaaaattcaaatgggtcctaccaaatttatattggacccatacgatttggtg 166  Q
    ||||| ||||| ||||||||||||||| ||| | || |||||||||||||  |||||| | |||||||||    
T  21433890 acactctctttgattggttaaaattcacatgagacccaccaaatttatatgagacccacatgatttggtg 21433959  T

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