View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_15 (Length: 293)
Name: NF9690_low_15
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 26744912 - 26744652
Alignment:
| Q |
19 |
catgcgactgtgtgagtgtatcggatttgaatacacatatcggaagcaaagtggtacttatagttgtcacccaaagacaaagtttttaaatgggtttcat |
118 |
Q |
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| T |
26744912 |
catgcgactgtgtgagtgtatcggatttgaatacacatatcggaagcaaagtggtacttatagttgtcacccaaagacaaagtttttaaatgggtttcat |
26744813 |
T |
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| Q |
119 |
tcaccacatttccaaaaatcaattttcttgctattgccgaaaaacaatattcatttttcccacgagaacattgtcaaggatgatagcttggtttgttcac |
218 |
Q |
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| T |
26744812 |
tcaccacatttccaaaaatcaattttcttgctattgccgaaaaacaatattgatttttcccacgagaacattgtcaaggatgatagcttggtttgttcac |
26744713 |
T |
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| Q |
219 |
aaaatgcaccaaaacaactagtaagattatatctcaaaggcaaagacaatggatcagtgaa |
279 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
26744712 |
aaaatgcaccaaaacaactagtaagattatatgtcaaaggcaaagacaatcgatcagtgaa |
26744652 |
T |
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