View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9690_low_16 (Length: 279)

Name: NF9690_low_16
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9690_low_16
NF9690_low_16
[»] chr6 (1 HSPs)
chr6 (5-265)||(31082977-31083237)
[»] chr2 (1 HSPs)
chr2 (5-265)||(9308200-9308460)
[»] chr8 (4 HSPs)
chr8 (131-201)||(32147757-32147827)
chr8 (182-219)||(30047439-30047476)
chr8 (132-204)||(19967182-19967254)
chr8 (132-204)||(21025740-21025812)
[»] chr7 (1 HSPs)
chr7 (182-219)||(39951700-39951737)
[»] chr5 (1 HSPs)
chr5 (182-219)||(198539-198576)
[»] chr4 (1 HSPs)
chr4 (182-219)||(3943693-3943730)
[»] chr3 (1 HSPs)
chr3 (182-219)||(22363321-22363358)
[»] chr1 (2 HSPs)
chr1 (132-204)||(20784559-20784631)
chr1 (132-204)||(29471427-29471499)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 265
Target Start/End: Complemental strand, 31083237 - 31082977
Alignment:
Q  5 gagaagcataggcagccgaatgtcttcagattaattagctttggtttgctgttatgccaagcttcaaatggagtctttttctgcacagattttgttggca 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  31083237 gagaaacataggcagccgaatgtcttcagattaattagctttggtttgctgctatgccaagcttcaaatggagtctttttctgcacagcttttgttggca 31083138  T
Q  105 atctgttcagcagaaaagctgcagtatttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgt 204  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31083137 atctgttcagcagaaaaactgcagtatttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcaccttgccatctccataattgt 31083038  T
Q  205 tcggtttttcctctctacaacactattctgttgtggagtgtatggtgctgttagttgatgt 265  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31083037 tcggtttttcctctctacaacaccattctgttgtggagtgtatggtgctgttagttgatgt 31082977  T

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Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 265
Target Start/End: Complemental strand, 9308460 - 9308200
Alignment:
Q  5 gagaagcataggcagccgaatgtcttcagattaattagctttggtttgctgttatgccaagcttcaaatggagtctttttctgcacagattttgttggca 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||    
T  9308460 gagaaacataggcagccgaatgtcttcagattaattagctttggtttgctgctatgccaagcttcaaatggagtctttttctgcacagcttttgttgaca 9308361  T
Q  105 atctgttcagcagaaaagctgcagtatttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgt 204  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9308360 atctgttcagcagaaaaactgcagtatttgtagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcaccttgccatctccataattgt 9308261  T
Q  205 tcggtttttcctctctacaacactattctgttgtggagtgtatggtgctgttagttgatgt 265  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9308260 tcggtttttcctctctacaacaccattctgttgtggagtgtatggtgctgttagttgatgt 9308200  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 32147827 - 32147757
Alignment:
Q  131 tttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataat 201  Q
    ||||||||||||||||| || || ||||| ||| |||| ||||| || ||||||||| |||||||||||||    
T  32147827 tttgcagcctctgcccacaacttttttggaaaatctttttcatgtagcaagcatctttccatctccataat 32147757  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 30047476 - 30047439
Alignment:
Q  182 catcttgccatctccataattgttcggtttttcctctc 219  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  30047476 catcttgccatctccataactgttctgtttttcctctc 30047439  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 19967254 - 19967182
Alignment:
Q  132 ttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgt 204  Q
    ||||||||||||||||| ||| ||| ||||| ||||| |||||||| | ||||||  |||| ||||| |||||    
T  19967254 ttgcagcctctgcccaatattccttaggcaaccctttctcatgaagcatgcatctgaccatttccattattgt 19967182  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 21025740 - 21025812
Alignment:
Q  132 ttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgt 204  Q
    ||||||||||||||||| ||| ||| ||||| ||||| |||||||| | ||||||  |||| ||||| |||||    
T  21025740 ttgcagcctctgcccaatattccttaggcaaccctttctcatgaagcatgcatctgaccatttccattattgt 21025812  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 39951700 - 39951737
Alignment:
Q  182 catcttgccatctccataattgttcggtttttcctctc 219  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  39951700 catcttgccatctccataactgttctgtttttcctctc 39951737  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 198539 - 198576
Alignment:
Q  182 catcttgccatctccataattgttcggtttttcctctc 219  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  198539 catcttgccatctccataactgttctgtttttcctctc 198576  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 3943730 - 3943693
Alignment:
Q  182 catcttgccatctccataattgttcggtttttcctctc 219  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  3943730 catcttgccatctccataactgttctgtttttcctctc 3943693  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 22363358 - 22363321
Alignment:
Q  182 catcttgccatctccataattgttcggtttttcctctc 219  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  22363358 catcttgccatctccataactgttctgtttttcctctc 22363321  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 20784559 - 20784631
Alignment:
Q  132 ttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgt 204  Q
    ||||||||||||||||| ||| ||| ||||| ||||| |||||||| | ||||||  |||| ||||| |||||    
T  20784559 ttgcagcctctgcccaatattccttaggcaaccctttctcatgaagcatgcatctgaccatttccattattgt 20784631  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 29471499 - 29471427
Alignment:
Q  132 ttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgt 204  Q
    ||||||||||||||||| ||| ||| ||||| ||||| |||||||| | ||||||  |||| ||||| |||||    
T  29471499 ttgcagcctctgcccaatattccttaggcaaccctttctcatgaagcatgcatctgaccatttccattattgt 29471427  T

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