View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_2 (Length: 567)
Name: NF9690_low_2
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 7055727 - 7055369
Alignment:
| Q |
16 |
ggacatcaagagaaatgaggaagaaaagtggtgttggtggttttgagtttatgactcctcctccagtgacttattatcggaatttgaagaatcgtgtcgg |
115 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7055727 |
ggacattaagagaaatgaggaagaaaagtggtgttggtggttttgagtttatggctcctcctccagtgacttattatcggaatttgaagaatcgtgtcgt |
7055628 |
T |
|
| Q |
116 |
tgatgttttgagtgatgaacagattaaggagtgtgaagagcttggagttttggttgatagagatgatcagggtaccattcttcagattttcactaagcct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7055627 |
tgatgttttgagtgatgaacagattaaggagtgtgaagagcttggaattttggttgatagagatgatcagggtactattcttcagattttcactaagcct |
7055528 |
T |
|
| Q |
216 |
gttggagataggtatgaaatgcacgtactctttgaatcatatcaatataatactcattttattgccttgatttcattattatcaatttgttttatatatt |
315 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7055527 |
gttggagataggtatgaaatgc----actctttgaatcatatcaatataatactcattttattgccttgatttcattattatcaatttgttttatatatt |
7055432 |
T |
|
| Q |
316 |
gggcttggaattcttatttttgcaccctatttgtatcttaaattatcaatttgacagtgtgtt |
378 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
7055431 |
gggcttggaattcttatttttgcaccctatttgtttcttaaattgtcaatttgacagtgtgtt |
7055369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 398 - 551
Target Start/End: Original strand, 29632628 - 29632780
Alignment:
| Q |
398 |
atgtttggtagacatcctttcctccgtaccacccatacacacatgactatgtgtcaatttttatcaatttttattaattcaacnnnnnnnnncagaggaa |
497 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
29632628 |
atgtttggtagacatcctttcctccataccacccatacacacatgactatgtgtcaatttttatcatattttattaattcaa-aaaaaaaaacagaggaa |
29632726 |
T |
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| Q |
498 |
ataaactgtaattgttgacctccctttctttgccactgccgccgctcctccggt |
551 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
29632727 |
ataaactgtaattgttgacctccctttctttgccgctgccaccgctcctccggt |
29632780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 39641854 - 39641651
Alignment:
| Q |
27 |
gaaatgaggaagaaaagtggtgttggtggttttgagtttatgactcctcctccagtgacttattatcggaatttgaagaatcgtgtcggtgatgttttga |
126 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||| || ||||||| |||||||||||||| |||||||||||||| || || |||||||||| |
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| T |
39641854 |
gaaatgagaaagagaagtggtgttggtggttttgagtttatgccttctcctccggtgacttattatcgtaatttgaagaatcgcgttggcgatgttttga |
39641755 |
T |
|
| Q |
127 |
gtgatgaacagattaaggagtgtgaagagcttggagttttggttgatagagatgatcagggtaccattcttcagattttcactaagcctgttggagatag |
226 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||| |
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| T |
39641754 |
gtgatgaacagattaaggagtgtgaagagcttgggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagatag |
39641655 |
T |
|
| Q |
227 |
gtat |
230 |
Q |
| |
|
|||| |
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|
| T |
39641654 |
gtat |
39641651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 39680395 - 39680599
Alignment:
| Q |
27 |
gaaatgaggaagaaaagtggtgttggtggttttgagtttatgactcctcctccagtgacttattatcggaatttgaagaatcgtgtcggtgatgttttga |
126 |
Q |
| |
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|||||||| |||| ||||||||||||||| |||||||||||| || |||||||||||||||||||||| |||||||||||||| || || |||||||||| |
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| T |
39680395 |
gaaatgagaaagagaagtggtgttggtgggtttgagtttatgccttctcctccagtgacttattatcgtaatttgaagaatcgcgttggcgatgttttga |
39680494 |
T |
|
| Q |
127 |
gtgatgaacagattaaggagtgtgaagagcttggagttttggttgatagagatgatcagggtaccattcttcagattttcactaagcctgttggagatag |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| | ||||||||||| || |||||| |||| ||||| |
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| T |
39680495 |
gtgatgaacagattaaggagtgtgaagagcttgggattctggttgatagagatgatcagggtactctgcttcagatttttaccaagcctattggtgatag |
39680594 |
T |
|
| Q |
227 |
gtatg |
231 |
Q |
| |
|
||||| |
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| T |
39680595 |
gtatg |
39680599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 39637228 - 39637015
Alignment:
| Q |
24 |
agagaaatgaggaagaaaagtggtgttggtggttttgagtttatgactcctcctccagtgacttattatcggaatttgaagaatcgtgtcggtgatgttt |
123 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| || ||||||||| ||||||||| |||||||| || ||||||| |
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| T |
39637228 |
agagaaatgagaaagaaaagtggtgttggtggttttgagtttatgccttctcctcctgttacttattataggaatttgataaatcgtgttggggatgttt |
39637129 |
T |
|
| Q |
124 |
tgagtgatgaacagattaaggagtgtgaagagc-ttggagttttggttgatagagatgatcagggtaccattcttcagattttcactaagcctgttggag |
222 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||| | |
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| T |
39637128 |
tgaatgatgaacagattaaggagtgtgaagagctttgggattttggttgatagagatgatcagggtactttgcttcagatttttactaagcctattggtg |
39637029 |
T |
|
| Q |
223 |
ataggtatgaaatg |
236 |
Q |
| |
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||||||||| |||| |
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| T |
39637028 |
ataggtatgtaatg |
39637015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 480
Target Start/End: Original strand, 31046423 - 31046511
Alignment:
| Q |
393 |
gagttatgtttggtagacatcctttcct--ccgtaccacccatacacacatgactatgtgtcaatttttatcaatttttattaattcaac |
480 |
Q |
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||||||||||||||| ||||||||| | || |||||||||||||||||| | |||||||||||||||| | ||||||||||||||| |
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| T |
31046423 |
gagttatgtttggtaaacatcctttaattgccataccacccatacacacatc-caatgtgtcaatttttattatattttattaattcaac |
31046511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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