View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_22 (Length: 248)
Name: NF9690_low_22
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_22 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 33033797 - 33033560
Alignment:
| Q |
11 |
cagagaggacatcggatacgaccttacttgaatatgattggtttctagggagactggagcctaagttcatcacctataatacaaaactatcaataaaata |
110 |
Q |
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| T |
33033797 |
cagagaggacatcggatacgaccttacttgaatatgattggtttctagggagactggagcctaagttcatcacctataatacaaaactatcaataaaata |
33033698 |
T |
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| Q |
111 |
agaaacataatgtttgcagattatgttcactgtatccctttagctgagaatgcagcagggaaaccaccattatagtttcgtatagctcctccacaacctg |
210 |
Q |
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| T |
33033697 |
agaaacataatgtttgcagattatgttcactgtatccctttagctgagaatgcagcagggaaaccaccattatagtttcgtatagctcctccacaacctg |
33033598 |
T |
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| Q |
211 |
ctagtcttgactctcctgccaccgccccatcaaaactc |
248 |
Q |
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| T |
33033597 |
ctggtcttgactctcctaccaccgccccatcaaaactc |
33033560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 33033312 - 33033211
Alignment:
| Q |
31 |
accttacttgaatatgattggtttctagggagactggagcctaagttcatcacctataatacaaaactatcaataaaataagaaacataatgtttgcaga |
130 |
Q |
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||||| |||||| | ||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||| |
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| T |
33033312 |
accttgcttgaacaggatcggtttctagggagacaggaacctaagttcatcacctatagtacaaaactatcaacaaaataggttacataatgtttgcaga |
33033213 |
T |
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| Q |
131 |
tt |
132 |
Q |
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|| |
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| T |
33033212 |
tt |
33033211 |
T |
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