View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_24 (Length: 246)
Name: NF9690_low_24
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 3316425 - 3316204
Alignment:
| Q |
7 |
tttggtgttcctttgactgatgaaaattttccagttggaataaggttattgtcaaaaggtgtgaattttgatccaaaaatttgaacaacttcatctaaaa |
106 |
Q |
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| T |
3316425 |
tttggtgttcctttgactgatgaaaattttccagttggaataaggttattgtcaaaaggtgtgaattttgatccaaaaatttgaacaacttcatctaaaa |
3316326 |
T |
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| Q |
107 |
tgttgccactgttgtggtttcctaagttccaataagcatggttcactaaatttactggtgtgggtttgtttagagcttttgcttgcataattatagttag |
206 |
Q |
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| T |
3316325 |
tgttgccactgttgtggtttcctaggttccaataagcatggttaactaaatttactggtgtgggtttgtttagagcttttgcttgcataattatagttag |
3316226 |
T |
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| Q |
207 |
ggaattttttcctataatgtag |
228 |
Q |
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| T |
3316225 |
ggaattttttcttagaatgtag |
3316204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 3323733 - 3323514
Alignment:
| Q |
9 |
tggtgttcctttgactgatgaaaattttccagttggaataaggttattgtcaaaaggtgtgaattttgatccaaaaatttgaacaacttcatctaaaatg |
108 |
Q |
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| T |
3323733 |
tggtgttcctttgaccgatgaaaattttccggtcggaataaggtttttgtcgataggtgtgaattttgatccaaaaatttgaacaacttcatctaaaatg |
3323634 |
T |
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| Q |
109 |
ttgccactgttgtggtttcctaagttccaataagcatggttcactaaatttactggtgtgggtttgtttagagcttttgcttgcataattatagttaggg |
208 |
Q |
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| T |
3323633 |
ttgccactgttgtggtttcctaggttccaataagcatggttcactaagtttactggtgtaggtttgtttagtgcttttgcttgcataattatggttaggg |
3323534 |
T |
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| Q |
209 |
aattttttcctataatgtag |
228 |
Q |
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| T |
3323533 |
aattttttccaagaatgtag |
3323514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 2299321 - 2299215
Alignment:
| Q |
94 |
acttcatctaaaatgttgccactgttgtggtttcctaagttccaataagcatggttcactaaatttactggtgtgggtttgtttagagcttttgcttgca |
193 |
Q |
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||||||| || |||||||||||| || ||| ||| | |||||||||||||||||| ||||||| |||||||| || |||||||| |||||||||| || |
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| T |
2299321 |
acttcatttagaatgttgccactattttggcctccaatgttccaataagcatggtttgctaaattcactggtgtaggcttgtttagtgcttttgctttca |
2299222 |
T |
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| Q |
194 |
taattat |
200 |
Q |
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||||||| |
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| T |
2299221 |
taattat |
2299215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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