View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_26 (Length: 242)
Name: NF9690_low_26
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 6987369 - 6987283
Alignment:
| Q |
1 |
agggaagttatgagcgccatgaggtgacaaaagggtcgctggatcggtgataccaccacgccattgaaggatgaaagcaatggtagc |
87 |
Q |
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| T |
6987369 |
agggaagttatgagcgccatgaggtgacaaaagggtcgctggatcggtgataccaccacgcctttgaaggatgaaagcaatggtagc |
6987283 |
T |
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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 6987170 - 6987125
Alignment:
| Q |
191 |
attggcatggcggtggttgaaggaagttacacacgcaacagcaatg |
236 |
Q |
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| T |
6987170 |
attggcatggcggtggttgaaggaagttacacacgcaacagcaatg |
6987125 |
T |
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