View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9690_low_27 (Length: 241)
Name: NF9690_low_27
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6485242 - 6485018
Alignment:
| Q |
1 |
ttaaccctaaaaacaaggtccaactatatatttagggttaaattgaattttaataggacttgctttgattacaaactaaccagtaactggataggataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6485242 |
ttaaccctaaaaacaaggtccaactatatatttagggttaaattgaattttaataggacttgctttgattacaaactaaccagtaactggataggataag |
6485143 |
T |
|
| Q |
101 |
aaaactcttccat--nnnnnnnnntataagataacccaagttaatggagtattttttaatcgagagagagatatatatgataggataattaagtttttag |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6485142 |
aaaactcttccataaaaaaaaatatataagataacccaagttaatggagtattttttaattgagagagagatatatatgataggataattaagtttttag |
6485043 |
T |
|
| Q |
199 |
gatgaaaacttgtactcccgatacc |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6485042 |
gatgaaaacttgtactcccgatacc |
6485018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University