View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_28 (Length: 240)
Name: NF9690_low_28
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33033404 - 33033182
Alignment:
| Q |
1 |
tgcaagagaagatataggagttcatcggaaaccaaattctgtccaagattatacnnnnnnnttagcttgcgtgacatactagggagacaggaaccttgct |
100 |
Q |
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| T |
33033404 |
tgcaagagaagatataggagttcatcggaaaccagattctgtccaagattatacaaaaatattagcttgcgtgacatactagggagacaggaaccttgct |
33033305 |
T |
|
| Q |
101 |
tgaacaggatcggtttctagggagacaggaacctaagttcatcacctatagtacaaaactatcaacaaaataggttacataatgtttgcagattcttttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33033304 |
tgaacaggatcggtttctagggagacaggaacctaagttcatcacctatagtacaaaactatcaacaaaataggttacataatgtttgcagattcttttt |
33033205 |
T |
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| Q |
201 |
atttcattgcattgcttagaatg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
33033204 |
atttcattgcattgcttagaatg |
33033182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 33033777 - 33033676
Alignment:
| Q |
93 |
accttgcttgaacaggatcggtttctagggagacaggaacctaagttcatcacctatagtacaaaactatcaacaaaataggttacataatgtttgcaga |
192 |
Q |
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||||| |||||| | ||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||| |
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| T |
33033777 |
accttacttgaatatgattggtttctagggagactggagcctaagttcatcacctataatacaaaactatcaataaaataagaaacataatgtttgcaga |
33033678 |
T |
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| Q |
193 |
tt |
194 |
Q |
| |
|
|| |
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|
| T |
33033677 |
tt |
33033676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 33120994 - 33120932
Alignment:
| Q |
145 |
cctatagtacaaaactatcaacaaaataggttac-ataatgtttgcagattctttttatttcat |
207 |
Q |
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|||||||||||| | |||||| ||||||| |||| |||||||||||||||| |||||||||||| |
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| T |
33120994 |
cctatagtacaataatatcaataaaatagattacaataatgtttgcagatt-tttttatttcat |
33120932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 22366276 - 22366306
Alignment:
| Q |
193 |
ttctttttatttcattgcattgcttagaatg |
223 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
22366276 |
ttctttttatttcattgcattgcttagaatg |
22366306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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