View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_30 (Length: 239)
Name: NF9690_low_30
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7534484 - 7534262
Alignment:
| Q |
1 |
atctagaagttcagagtcaagtccatgaatttcgagatagagatgcttacgatccaaaaaattataagatatgtgctttacttagaggtttgagagtgca |
100 |
Q |
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| T |
7534484 |
atctagaagttcagagtcaagtccatgaatttcgagatagagatgcttacgatccaaaaaattataagatatgtgctttacttagaggtttgagagtgca |
7534385 |
T |
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| Q |
101 |
aatgaaggaagctggctatattgcagatacggggcatgtgttgcatgacatagaccaggaaggcaaagaagatgctctccttgcccacaatgtgagactg |
200 |
Q |
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| T |
7534384 |
aatgaaggaagctggctatattgcagatacggggcatgtgttgcatgacatagaccaggaaggcaaagaagatgctctccttgcccacaatgtgagactg |
7534285 |
T |
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| Q |
201 |
gctgttgctcaaggtctctttaa |
223 |
Q |
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| T |
7534284 |
gctgttgctcaaggtctctttaa |
7534262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 7448925 - 7448714
Alignment:
| Q |
11 |
tcagagtcaagtccatgaatttcgagatagagatgcttacgatccaaaaaattataagatatgtgctttacttagaggtttgagagtgcaaatgaaggaa |
110 |
Q |
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| T |
7448925 |
tcagagtcgagtccatgaatttcgaaatggagatacgtccgatccaaaaagtgataagatttatactttgcttagaggtttgagagagcaaatgaaagaa |
7448826 |
T |
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| Q |
111 |
gctggctatattgcagatacggggcatgtgttgcatgacatagaccaggaaggcaaagaagatgctctccttgcccacaatgtgagactggctgttgctc |
210 |
Q |
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| T |
7448825 |
gatggctatattgcagagacgagatatgcgttgcatgacatagacgaggaaggcaaagaagatgttctccttgcccacagtgagagacttgctgttgcta |
7448726 |
T |
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| Q |
211 |
aaggtctcttta |
222 |
Q |
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| T |
7448725 |
aaggtctcttta |
7448714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 15079984 - 15080133
Alignment:
| Q |
74 |
tgctttacttagaggtttgagagtgcaaatgaaggaagctggctatattgcagatacggggcatgtgttgcatgacatagaccaggaaggcaaagaagat |
173 |
Q |
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|||||| |||||| ||||||| ||||| ||||| |||||||||||||||||||| || | | || |||||| |||||||||||| ||||||||| |
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| T |
15079984 |
tgctttgcttagacgtttgagggtgcagatgaaagaagctggctatattgcagagacaagattttgtttacatgacgtagaccaggaagataaagaagat |
15080083 |
T |
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| Q |
174 |
gctctccttgcccacaatgtgagactggctgttgctcaaggtctctttaa |
223 |
Q |
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| T |
15080084 |
gctctccttggccacagtgagagacttgctattgctaagggtctccttaa |
15080133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 18663837 - 18663695
Alignment:
| Q |
81 |
cttagaggtttgagagtgcaaatgaaggaagctggctatattgcagatacggggcatgtgttgcatgacatagaccaggaaggcaaagaagatgctctcc |
180 |
Q |
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|||||| ||||||| ||||| ||||| |||||||||||||||||||| || | | || |||||| |||||||||||| |||||||||||||||| |
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| T |
18663837 |
cttagacgtttgagggtgcagatgaaagaagctggctatattgcagagacaagattttgtttacatgacgtagaccaggaagataaagaagatgctctcc |
18663738 |
T |
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| Q |
181 |
ttgcccacaatgtgagactggctgttgctcaaggtctctttaa |
223 |
Q |
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||| ||||| || |||||| ||| ||||| | |||||| |||| |
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| T |
18663737 |
ttggccacagtgagagacttgctattgctaagggtctccttaa |
18663695 |
T |
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