View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_32 (Length: 239)
Name: NF9690_low_32
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11627539 - 11627763
Alignment:
| Q |
1 |
ttcttctgcaaaggcttgtacctgtattcgagaatgaggtgaatttgctcacaggggttgaagcagaagtggtgtatctgaaagaaaaattggagctcat |
100 |
Q |
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| T |
11627539 |
ttcttctgcaaaggcttgtacctgtattcgagaatgaggtgaatttgctcacaggggttgaagcagaagtggtgtatctgaaagaaaaattggagctcat |
11627638 |
T |
|
| Q |
101 |
aaaagccttcttaaaggttgccgatgcgttagaagagagtgatgaggaactcaaagtttgggttaagcaagtcagagatgttgctcatgagactgaagat |
200 |
Q |
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|||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11627639 |
aaaagctttcttaaaggttgctgatgcgttagaagaaagtgacgaggaactcaaagtttgggttaagcaagtcagagatgttgctcatgagactgaagat |
11627738 |
T |
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| Q |
201 |
attcttgatgaattggaacttcttg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
11627739 |
attcttgatgaattggaacttcttg |
11627763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11649459 - 11649683
Alignment:
| Q |
1 |
ttcttctgcaaaggcttgtacctgtattcgagaatgaggtgaatttgctcacaggggttgaagcagaagtggtgtatctgaaagaaaaattggagctcat |
100 |
Q |
| |
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||||||||||||||||||| |||||||| |||||| || ||||||||||| | || ||||||| ||||||||||||||||||| | | ||||| ||||| |
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| T |
11649459 |
ttcttctgcaaaggcttgtgcctgtatttgagaataagatgaatttgctcgctggcgttgaagacgaagtggtgtatctgaaaggacagttggaactcat |
11649558 |
T |
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| Q |
101 |
aaaagccttcttaaaggttgccgatgcgttagaagagagtgatgaggaactcaaagtttgggttaagcaagtcagagatgttgctcatgagactgaagat |
200 |
Q |
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| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11649559 |
aggagccttcttaaaggttgcagatgcattagaagagagtgatgaggaactcaaagtttgggttaagcaagtcagagatgttgctcatgagactgaagat |
11649658 |
T |
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| Q |
201 |
attcttgatgaattggaacttcttg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
11649659 |
attcttgatgaattggaacttcttg |
11649683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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