View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_37 (Length: 217)
Name: NF9690_low_37
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 25882705 - 25882831
Alignment:
| Q |
76 |
gtgatatgaaaaggtcgaaagattatgcaaaaaactccctttcccaagctc-atcaatataatgatgagcaaataccaaaccactttagactgccaacca |
174 |
Q |
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| T |
25882705 |
gtgatatgaaaaggtcgaaagattatgcaaaaaactccctttcccaagcgagatcaatataatgatgagcaaataccaaatcactttagactgccaacca |
25882804 |
T |
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| Q |
175 |
tggaagaatacatcagaaagacaaatc |
201 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
25882805 |
tggaggaatacatcagaaagacaaatc |
25882831 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 25882468 - 25882546
Alignment:
| Q |
1 |
taccttaaaaagataacaatcacagcaatatctccagttcataataatgaaatgtcactttgtttagaggtccaagtga |
79 |
Q |
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|||||||||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25882468 |
taccttaaaaagataacattcacgactatatcgccagttcataataatgaaatgtcactttgtttagaggtccaagtga |
25882546 |
T |
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