View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_38 (Length: 214)
Name: NF9690_low_38
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 48271660 - 48271873
Alignment:
| Q |
1 |
cccttatttaatttactgtttccataatgataaaatcatgatactaacacaatcatatcaggaatctagacaagcgcagacgtcttttgattgcaatgga |
100 |
Q |
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| T |
48271660 |
cccttatttaatttactgtttccataatgataaaatcatgatactaacacaatcatatcaggaatctagacaagcgcagacgtcttttgattgcaatgga |
48271759 |
T |
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| Q |
101 |
tgtggcatttggaatggaatacctgcatggaaaaaacatagtacactttgacttgaaaagcgacaacttgcttgtgaatctccgagatccacaccgccca |
200 |
Q |
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| T |
48271760 |
tgtggcatttggaatggaatacctgcatggaaaaaacatagtacactttgacttgaaaagcgacaacttgcttgtgaatctccgagatccacaccgccca |
48271859 |
T |
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| Q |
201 |
atatgcaaggttta |
214 |
Q |
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|||||||||||||| |
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| T |
48271860 |
atatgcaaggttta |
48271873 |
T |
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Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 55 - 213
Target Start/End: Original strand, 25243382 - 25243540
Alignment:
| Q |
55 |
atatcaggaatctagacaagcgcagacgtcttttgattgcaatggatgtggcatttggaatggaatacctgcatggaaaaaacatagtacactttgactt |
154 |
Q |
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||||||||||||| |||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| || ||||| ||||| |
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| T |
25243382 |
atatcaggaatcttgacaagcgcaagcgtcttatgattgcaatggatgtggcctttggcatggagtacctccatggaaaaaacattgtgcacttcgactt |
25243481 |
T |
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| Q |
155 |
gaaaagcgacaacttgcttgtgaatctccgagatccacaccgcccaatatgcaaggttt |
213 |
Q |
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| T |
25243482 |
gaaaagtgacaacttgcttgtgaatcttcgtgatccacaccgcccaatatgcaaggttt |
25243540 |
T |
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