View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_39 (Length: 201)
Name: NF9690_low_39
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 2503125 - 2502954
Alignment:
| Q |
15 |
acatcaaaatcatcatctctaatcaaatatctagaaccacatgctactatttttggttgcaaaatttaaaacacacccacaacctaaaaatctatgaatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2503125 |
acatcaaaatcatcatctctaatcaaatatctagaaccacatgctactatttttggttgcaaaatttaaaacacacccacaacctaaaaatctatgaatc |
2503026 |
T |
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| Q |
115 |
aaatacaaaacgtaaagtatcattgaaattaccagaaaagccgaagacttgagacatgggtgcagctgaaac |
186 |
Q |
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||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2503025 |
aaataaaaaacgtaaaggatcattgaaagtaccagaaaagccgaagacttgagacatgggtgcagctgaaac |
2502954 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 12788767 - 12788724
Alignment:
| Q |
76 |
aaatttaaaacacacccacaacctaaaaatctatgaatcaaata |
119 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
12788767 |
aaatttaaaacacacccacaacctaaaaatccatgaatcgaata |
12788724 |
T |
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