View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9690_low_7 (Length: 377)
Name: NF9690_low_7
Description: NF9690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9690_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 47919310 - 47919671
Alignment:
| Q |
1 |
agcccttgatggacttcaaggcctgttctatgtaggaaccggatgtccgtttagaaggtttgctctttatggttttgaccctcc--gcgccaaagaagag |
98 |
Q |
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||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47919310 |
agcccttgatggacttcaaggcccgttctatgtaggaaccagctgtccgtttagaaggtttgctctttatggttttgaccctccacgcgccaaagaagag |
47919409 |
T |
|
| Q |
99 |
cacgcatctttctgtagttgttgctttgtgcgttataagaagcatgtcaacacctcagaagagaaccaggcactaaggatgggtgactgtgatgatgaag |
198 |
Q |
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| T |
47919410 |
cacgcatctttctgtagttgttgctttgtgcgttataagaagcatgtcaacagctcagaagagaaccaggcactaaggatgggtgactatgatgatgaag |
47919509 |
T |
|
| Q |
199 |
aggtgaatctttcacaattctccaagaaatttggtaactcaaatattcttattgactcaattccagtggcacagttccaaggtaggccgcttgctgatca |
298 |
Q |
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| T |
47919510 |
aggtgaatctttcacaattctccaagaaatttggtaactcaaatattcttattgactcaattccagtggcacagttccaaggtaggccgcttgctgatca |
47919609 |
T |
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| Q |
299 |
tccttctttgaaaaatggacaccctcctggtgctctcaccatacctcgtgagctgcttgatg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47919610 |
tccttctttgaaaaatggacaccctcctggtgctctcaccatacctcgtgagctgcttgatg |
47919671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 29917920 - 29917553
Alignment:
| Q |
1 |
agcccttgatggacttcaaggcctgttctatgtaggaaccggatgtccgtttagaaggtttgctctttatggttttgaccctc--cgcgccaaagaagag |
98 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
29917920 |
agcccttgatggacttcaaggcccagtctatgtaggaaccggctgtctgtttagaaggtttgctctttatggttttgatcctccacgcgccaaagaagac |
29917821 |
T |
|
| Q |
99 |
cacgcatctttctgtagttgttgctttgtgcg---ttataagaagcatgtcaacacctcagaagagaaccaggcactaaggatgggt---gactgtgatg |
192 |
Q |
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| T |
29917820 |
cgcgcatctttctgtagttgttgctttggacgcaataagaagaagcatgccaacacctcagaagagaacagggcactaaggatgggtgacgactctgacg |
29917721 |
T |
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| Q |
193 |
atgaagaggtgaatctttcacaattctccaagaaatttggtaactcaaatattcttattgactcaattccagtggcacagttccaaggtaggccgcttgc |
292 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29917720 |
atgaagagatgaatctatcacaattctccaagaaatttgggaactcaaatatccttattgactcaattccagtggcacagttccaaggtaggccacttgc |
29917621 |
T |
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| Q |
293 |
tgatcatccttctttgaaaaatggacaccctcctggtgctctcaccatacctcgtgagctgcttgatg |
360 |
Q |
| |
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|||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29917620 |
tgatcatcctgctgtgaaaaatggacgccctcctggtgctctcaccatacctcgtgagctgcttgatg |
29917553 |
T |
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